RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FHOD1Q9Y613 1164 aa4.87□□□□□ -1.63
VPS35-207ENST00000568191 ACRP10323 421 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 PRKCAP17252 672 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 GNPTABQ3T906 1256 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 HSF5Q4G112 596 aaPredicted RBP4.86□□□□□ -1.63
VPS35-207ENST00000568191 TDRD10Q5VZ19 366 aaKnown RBP4.86□□□□□ -1.63
VPS35-207ENST00000568191 CRTC3Q6UUV7 619 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 ZPBP2Q6X784 338 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 NUP43Q8NFH3 380 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 GPRASP2Q96D09 838 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 IRF2BPLQ9H1B7 796 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 GP6Q9HCN6 339 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 AP5S1Q9NUS5 200 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 EFR3BQ9Y2G0 817 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.86□□□□□ -1.63
VPS35-207ENST00000568191 IRAK3Q9Y616 596 aa4.86□□□□□ -1.63
VPS35-207ENST00000568191 MYOCOSA0A1B0GUC4 107 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 C9IYK1 514 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 PPM1BO75688 479 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 KRT1P04264 644 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 CD247P20963 164 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 GALK1P51570 392 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 ERVFRD-1P60508 538 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 RACK1P63244 317 aaKnown RBP4.85□□□□□ -1.63
VPS35-207ENST00000568191 NR1I3Q14994 352 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 RAB3GAP1Q15042 981 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 AXDND1Q5T1B0 1012 aaPredicted RBP4.85□□□□□ -1.63
VPS35-207ENST00000568191 TCERG1LQ5VWI1 586 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 HEATR6Q6AI08 1181 aaKnown RBP4.85□□□□□ -1.63
VPS35-207ENST00000568191 SPOCD1Q6ZMY3 1216 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 ADAT2Q7Z6V5 191 aaKnown RBP4.85□□□□□ -1.63
VPS35-207ENST00000568191 SIGLEC10Q96LC7 697 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 SRRTQ9BXP5 876 aaKnown RBP4.85□□□□□ -1.63
VPS35-207ENST00000568191 GINM1Q9NU53 330 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 ERVK13-1Q9NX77 482 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 ZNF214Q9UL59 606 aaPredicted RBP4.85□□□□□ -1.63
VPS35-207ENST00000568191 MINPP1Q9UNW1 487 aa4.85□□□□□ -1.63
VPS35-207ENST00000568191 NOTOA8MTQ0 251 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 NAT2P11245 290 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 CTSKP43235 329 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 SOX9P48436 509 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 ZNF445P59923 1031 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 YBX1P67809 324 aaKnown RBP4.84□□□□□ -1.63
VPS35-207ENST00000568191 SLC7A5Q01650 507 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 PPP2R5EQ16537 467 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 DCAF15Q66K64 600 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 SLCO6A1Q86UG4 719 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 LSRQ86X29 649 aaPredicted RBP4.84□□□□□ -1.63
VPS35-207ENST00000568191 VPS37DQ86XT2 251 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 NT5DC4Q86YG4 428 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 FIBCD1Q8N539 461 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 C19orf47Q8N9M1 422 aaKnown RBP4.84□□□□□ -1.63
VPS35-207ENST00000568191 BRF1Q92994 677 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 MRRFQ96E11 262 aaKnown RBP4.84□□□□□ -1.63
VPS35-207ENST00000568191 SEC16BQ96JE7 1060 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 FAM86C1Q9NVL1 165 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 WHRNQ9P202 907 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 ACSL6Q9UKU0 697 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 STRIP2Q9ULQ0 834 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 KCTD3Q9Y597 815 aa4.84□□□□□ -1.63
VPS35-207ENST00000568191 H0Y8X5 98 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 N4BP3O15049 544 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 RECKO95980 971 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 CD3EP07766 207 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 VIPR1P32241 457 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 CCDC81Q6ZN84 652 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 RUFY4Q6ZNE9 571 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 CABP7Q86V35 215 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 C1QL4Q86Z23 238 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 CILP2Q8IUL8 1156 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 RASGRP4Q8TDF6 673 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 ZDHHC15Q96MV8 337 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 PLCD4Q9BRC7 762 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 SGPP1Q9BX95 441 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 SLC12A9Q9BXP2 914 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 NOL6Q9H6R4 1146 aaKnown RBP4.83□□□□□ -1.64
VPS35-207ENST00000568191 CCSER2Q9H7U1 834 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 IMPACTQ9P2X3 320 aa4.83□□□□□ -1.64
VPS35-207ENST00000568191 TRBV23OR9-2A0A075B6M9 112 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 NUDT19A8MXV4 375 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 PFKLP17858 780 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 GIPRP48546 466 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 CORO7P57737 925 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 GNL2Q13823 731 aaKnown RBP4.82□□□□□ -1.64
VPS35-207ENST00000568191 TARBP2Q15633 366 aaKnown RBP4.82□□□□□ -1.64
VPS35-207ENST00000568191 EEF1DP3Q658K8 133 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 LCNL1Q6ZST4 164 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 TMC6Q7Z403 805 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 NLGN1Q8N2Q7 840 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 CRACR2BQ8N4Y2 399 aaPredicted RBP4.82□□□□□ -1.64
VPS35-207ENST00000568191 HAUS7Q99871 368 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 RAPGEFL1Q9UHV5 662 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 DBR1Q9UK59 544 aaKnown RBP4.82□□□□□ -1.64
VPS35-207ENST00000568191 INPP5FQ9Y2H2 1132 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 SUGT1Q9Y2Z0 365 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 ZNF451Q9Y4E5 1061 aa4.82□□□□□ -1.64
VPS35-207ENST00000568191 SHOXO15266 292 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 SASH1O94885 1247 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 SDHBP21912 280 aa4.81□□□□□ -1.64
VPS35-207ENST00000568191 L1CAMP32004 1257 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms