RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 SMARCAL1Q9NZC9 954 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 L1RE1Q9UN81 338 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 FAM169AQ9Y6X4 670 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 TRIM49BA6NDI0 452 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 ATP1A1P05023 1023 aaKnown RBP13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 CSF1RP07333 972 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 KLRK1P26718 216 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 EPS15P42566 896 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 EVX2Q03828 476 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 KIFC2Q96AC6 838 aa13.77□□□□□ -0.21
SHROOM3-208ENST00000486758 RTL9Q8NET4 1388 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 USP17L3A6NCW0 530 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 USP17L4A6NCW7 530 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 KRT31Q15323 416 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 PARP10Q53GL7 1025 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 USP17L1Q7RTZ2 530 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 TAX1BP1Q86VP1 789 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 ENAHQ8N8S7 591 aaPredicted RBP13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 PLCD4Q9BRC7 762 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 TCP11L1Q9NUJ3 509 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 GDAQ9Y2T3 454 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 TYW1BQ6NUM6 668 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 TPTE2Q6XPS3 522 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 DYMQ7RTS9 669 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 SMCR8Q8TEV9 937 aaPredicted RBP13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 NAA15Q9BXJ9 866 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 FAM207AQ9NSI2 230 aaPredicted RBP13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 CHD2O14647 1828 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 PP2D1A8MPX8 630 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 COPB1P53618 953 aaKnown RBP13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 DTHD1Q6ZMT9 781 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 CCDC125Q86Z20 511 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 EFCAB13Q8IY85 973 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 SH2D3CQ8N5H7 860 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 CCDC113Q9H0I3 377 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 FBXO3Q9UK99 471 aa13.76□□□□□ -0.21
SHROOM3-208ENST00000486758 HGSO14964 777 aaPredicted RBP13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 BUB1O43683 1085 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 PDE6BP35913 854 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 TNNI2P48788 182 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 OR8K1Q8NGG5 319 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 SELENOOQ9BVL4 669 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 GPCPD1Q9NPB8 672 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 TXKP42681 527 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 KRT83P78385 493 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 SPAG1Q07617 926 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 CFAP58Q5T655 872 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 ADGRA1Q86SQ6 560 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 CCDC114Q96M63 670 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 SMIM23A6NLE4 172 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 NDUFA10O95299 355 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 FAM212AQ96EL1 285 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 PANX2Q96RD6 677 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 ABHD10Q9NUJ1 306 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 CPDO75976 1380 aa13.75□□□□□ -0.21
SHROOM3-208ENST00000486758 NFAT5O94916 1531 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 A0A087WUV0 522 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 ESYT3A0FGR9 886 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 B4DLN1 442 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 CCNT1O60563 726 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 TACC1O75410 805 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 C8orf74Q6P047 294 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 PNMA1Q8ND90 353 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 NBPF3Q9H094 633 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 GYPCP04921 128 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 LIFRP42702 1097 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 MECOMQ03112 1051 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 TBC1D7Q9P0N9 293 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 RTCBQ9Y3I0 505 aaKnown RBP13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 BACH1O14867 736 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 OPA1O60313 960 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 BAG3O95817 575 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 KCNG1Q9UIX4 513 aa13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 CCNL1Q9UK58 526 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.74□□□□□ -0.21
SHROOM3-208ENST00000486758 NF2P35240 595 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 TRIM28Q13263 835 aaKnown RBP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 NR1I3Q14994 352 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 E2F5Q15329 346 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 MMS22LQ6ZRQ5 1243 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 KLHL7Q8IXQ5 586 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 CSGALNACT2Q8N6G5 542 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 PAGE5Q96GU1 130 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 ALS2CR12Q96Q35 445 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 FAM53CQ9NYF3 392 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 FRMPD2Q68DX3 1309 aaPredicted RBP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 E7EVH7 732 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 PSMA7O14818 248 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 UFL1O94874 794 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 CHRM1P11229 460 aaPredicted RBP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 CD44P16070 742 aaKnown RBP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 ITPK1Q13572 414 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 SPTY2D1Q68D10 685 aaPredicted RBP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 C2CD5Q86YS7 1000 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 GOPCQ9HD26 462 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 TMCO5BA8MYB1 307 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 PTPREP23469 700 aa13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 ARID4AP29374 1257 aaPredicted RBP13.73□□□□□ -0.21
SHROOM3-208ENST00000486758 VAV2P52735 878 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms