RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CBX2Q14781 532 aaPredicted RBP8.64□□□□□ -1.03
LINC01040-201ENST00000425048 ZNF326Q5BKZ1 582 aaKnown RBP8.64□□□□□ -1.03
LINC01040-201ENST00000425048 INTS3Q68E01 1043 aaKnown RBP8.64□□□□□ -1.03
LINC01040-201ENST00000425048 TMC6Q7Z403 805 aa8.64□□□□□ -1.03
LINC01040-201ENST00000425048 FAM129CQ86XR2 697 aa8.64□□□□□ -1.03
LINC01040-201ENST00000425048 CXorf38Q8TB03 319 aa8.64□□□□□ -1.03
LINC01040-201ENST00000425048 NT5C1AQ9BXI3 368 aa8.64□□□□□ -1.03
LINC01040-201ENST00000425048 AP5S1Q9NUS5 200 aa8.64□□□□□ -1.03
LINC01040-201ENST00000425048 GSNP06396 782 aa8.63□□□□□ -1.03
LINC01040-201ENST00000425048 VMACQ2NL98 169 aa8.63□□□□□ -1.03
LINC01040-201ENST00000425048 IGDCC3Q8IVU1 814 aa8.63□□□□□ -1.03
LINC01040-201ENST00000425048 SLC9A7Q96T83 725 aa8.63□□□□□ -1.03
LINC01040-201ENST00000425048 BCL11AQ9H165 835 aa8.63□□□□□ -1.03
LINC01040-201ENST00000425048 NUDT19A8MXV4 375 aa8.62□□□□□ -1.03
LINC01040-201ENST00000425048 TMEM52Q8NDY8 209 aa8.62□□□□□ -1.03
LINC01040-201ENST00000425048 DSCC1Q9BVC3 393 aa8.62□□□□□ -1.03
LINC01040-201ENST00000425048 TNFRSF12AQ9NP84 129 aa8.62□□□□□ -1.03
LINC01040-201ENST00000425048 A0A1W2PQ27 194 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 A0A1W2PQ64 194 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 A0A1W2PQC6 194 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 A0A1W2PQD8 194 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 CEBPAP49715 358 aaPredicted RBP8.61□□□□□ -1.03
LINC01040-201ENST00000425048 HLA-DQA1Q5Y7H0 255 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 SP8Q8IXZ3 490 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 C7orf61Q8IZ16 206 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 EAF1Q96JC9 268 aaPredicted RBP8.61□□□□□ -1.03
LINC01040-201ENST00000425048 PWWP2AQ96N64 755 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 BCL2L13Q9BXK5 485 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 IMPACTQ9P2X3 320 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 SUCOQ9UBS9 1254 aaKnown RBP8.61□□□□□ -1.03
LINC01040-201ENST00000425048 PCDHA5Q9Y5H7 936 aa8.61□□□□□ -1.03
LINC01040-201ENST00000425048 BUB1BO60566 1050 aaPredicted RBP8.6□□□□□ -1.03
LINC01040-201ENST00000425048 MRPL58Q14197 206 aaKnown RBP8.6□□□□□ -1.03
LINC01040-201ENST00000425048 NR1I3Q14994 352 aa8.6□□□□□ -1.03
LINC01040-201ENST00000425048 ERICH6BQ5W0A0 696 aa8.6□□□□□ -1.03
LINC01040-201ENST00000425048 CWF19L1Q69YN2 538 aaKnown RBP8.6□□□□□ -1.03
LINC01040-201ENST00000425048 CRTC3Q6UUV7 619 aa8.6□□□□□ -1.03
LINC01040-201ENST00000425048 CCDC144CPQ8IYA2 1237 aa8.6□□□□□ -1.03
LINC01040-201ENST00000425048 FEZF2Q8TBJ5 459 aa8.6□□□□□ -1.03
LINC01040-201ENST00000425048 JMJD8Q96S16 334 aa8.6□□□□□ -1.03
LINC01040-201ENST00000425048 GSTM1P09488 218 aa8.59□□□□□ -1.03
LINC01040-201ENST00000425048 RTP2Q5QGT7 225 aa8.59□□□□□ -1.03
LINC01040-201ENST00000425048 RPTNQ6XPR3 784 aa8.59□□□□□ -1.03
LINC01040-201ENST00000425048 ZDHHC14Q8IZN3 488 aa8.59□□□□□ -1.03
LINC01040-201ENST00000425048 NAT16Q8N8M0 369 aa8.59□□□□□ -1.03
LINC01040-201ENST00000425048 LINC01356Q8N9X3 169 aa8.59□□□□□ -1.03
LINC01040-201ENST00000425048 GZF1Q9H116 711 aaPredicted RBP8.59□□□□□ -1.03
LINC01040-201ENST00000425048 LUC7LQ9NQ29 371 aaKnown RBP8.59□□□□□ -1.03
LINC01040-201ENST00000425048 MAPKAPK2P49137 400 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 NCKAP1LP55160 1127 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 ZC3H14Q6PJT7 736 aaKnown RBP8.58□□□□□ -1.04
LINC01040-201ENST00000425048 JAMLQ86YT9 394 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 KIAA0825Q8IV33 1275 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 NLGN1Q8N2Q7 840 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 SPON2Q9BUD6 331 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 SLC12A9Q9BXP2 914 aa8.58□□□□□ -1.04
LINC01040-201ENST00000425048 IRS2Q9Y4H2 1338 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 IMPDH2P12268 514 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 PFKLP17858 780 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 NOP2P46087 812 aaKnown RBP8.57□□□□□ -1.04
LINC01040-201ENST00000425048 MVKQ03426 396 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 ANKRD39Q53RE8 183 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 NOL9Q5SY16 702 aaKnown RBP8.57□□□□□ -1.04
LINC01040-201ENST00000425048 DBX2Q6ZNG2 339 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 GIPC2Q8TF65 315 aa8.57□□□□□ -1.04
LINC01040-201ENST00000425048 FAM86C2PA6NEL3 165 aa8.56□□□□□ -1.04
LINC01040-201ENST00000425048 C9IYK1 514 aa8.56□□□□□ -1.04
LINC01040-201ENST00000425048 CELA3BP08861 270 aa8.56□□□□□ -1.04
LINC01040-201ENST00000425048 ACRP10323 421 aa8.56□□□□□ -1.04
LINC01040-201ENST00000425048 PMS1P54277 932 aaKnown RBP8.56□□□□□ -1.04
LINC01040-201ENST00000425048 SMARCC1Q92922 1105 aaPredicted RBP8.56□□□□□ -1.04
LINC01040-201ENST00000425048 A0A1W2PQJ5 194 aa8.55□□□□□ -1.04
LINC01040-201ENST00000425048 SKOR2Q2VWA4 1001 aaPredicted RBP8.55□□□□□ -1.04
LINC01040-201ENST00000425048 PLEKHN1Q494U1 663 aaPredicted RBP8.55□□□□□ -1.04
LINC01040-201ENST00000425048 SYT8Q8NBV8 401 aa8.55□□□□□ -1.04
LINC01040-201ENST00000425048 ZNRF3Q9ULT6 936 aa8.55□□□□□ -1.04
LINC01040-201ENST00000425048 SHOXO15266 292 aa8.54□□□□□ -1.04
LINC01040-201ENST00000425048 CAP1Q01518 475 aa8.54□□□□□ -1.04
LINC01040-201ENST00000425048 TARBP2Q15633 366 aaKnown RBP8.54□□□□□ -1.04
LINC01040-201ENST00000425048 PAQR3Q6TCH7 311 aa8.54□□□□□ -1.04
LINC01040-201ENST00000425048 TMEM87AQ8NBN3 555 aa8.54□□□□□ -1.04
LINC01040-201ENST00000425048 TP53I13Q8NBR0 393 aaPredicted RBP8.54□□□□□ -1.04
LINC01040-201ENST00000425048 TEPSINQ96N21 525 aa8.54□□□□□ -1.04
LINC01040-201ENST00000425048 SRRTQ9BXP5 876 aaKnown RBP8.54□□□□□ -1.04
LINC01040-201ENST00000425048 ZC3H12DA2A288 527 aaKnown RBP8.53□□□□□ -1.04
LINC01040-201ENST00000425048 CYBBP04839 570 aa8.53□□□□□ -1.04
LINC01040-201ENST00000425048 MSL3P1P0C860 447 aa8.53□□□□□ -1.04
LINC01040-201ENST00000425048 IGFBP6P24592 240 aaPredicted RBP8.53□□□□□ -1.04
LINC01040-201ENST00000425048 CYP2R1Q6VVX0 501 aa8.53□□□□□ -1.04
LINC01040-201ENST00000425048 PRRT2Q7Z6L0 340 aaPredicted RBP8.53□□□□□ -1.04
LINC01040-201ENST00000425048 TAB3Q8N5C8 712 aaPredicted RBP8.53□□□□□ -1.04
LINC01040-201ENST00000425048 RGS22Q8NE09 1264 aa8.53□□□□□ -1.04
LINC01040-201ENST00000425048 TM9SF2Q99805 663 aa8.53□□□□□ -1.04
LINC01040-201ENST00000425048 GP6Q9HCN6 339 aa8.53□□□□□ -1.04
LINC01040-201ENST00000425048 H0Y8X5 98 aa8.52□□□□□ -1.05
LINC01040-201ENST00000425048 FGF10O15520 208 aaPredicted RBP8.52□□□□□ -1.05
LINC01040-201ENST00000425048 ZNF445P59923 1031 aa8.52□□□□□ -1.05
LINC01040-201ENST00000425048 ZNF200P98182 395 aaPredicted RBP8.52□□□□□ -1.05
LINC01040-201ENST00000425048 TDRD10Q5VZ19 366 aaKnown RBP8.52□□□□□ -1.05
LINC01040-201ENST00000425048 DCAF15Q66K64 600 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms