RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	TPCN1	Q9ULQ1	816 aa		15.28	■□□□□ 0.04
SF1-206	ENST00000413725	HPS5	Q9UPZ3	1129 aa		15.28	■□□□□ 0.04
SF1-206	ENST00000413725	ATP2A1	O14983	1001 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	PLEKHA8P1	O95397	391 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	HSPA8	P11142	646 aa	Known RBP	15.27	■□□□□ 0.04
SF1-206	ENST00000413725	HOXD11	P31277	338 aa	Predicted RBP	15.27	■□□□□ 0.04
SF1-206	ENST00000413725	STAT3	P40763	770 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	CCT2	P78371	535 aa	Known RBP	15.27	■□□□□ 0.04
SF1-206	ENST00000413725	STK3	Q13188	491 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	CDC37	Q16543	378 aa	Predicted RBP	15.27	■□□□□ 0.04
SF1-206	ENST00000413725	CCDC174	Q6PII3	467 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	POTEE	Q6S8J3	1075 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	CPXCR1	Q8N123	301 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	ERO1A	Q96HE7	468 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	RIOX1	Q9H6W3	641 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	JMJD4	Q9H9V9	463 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	CWC22	Q9HCG8	908 aa	Known RBP	15.27	■□□□□ 0.04
SF1-206	ENST00000413725	ZNF214	Q9UL59	606 aa	Predicted RBP	15.27	■□□□□ 0.04
SF1-206	ENST00000413725	LIMCH1	Q9UPQ0	1083 aa		15.27	■□□□□ 0.04
SF1-206	ENST00000413725	CPLX1	O14810	134 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	PEX10	O60683	326 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	SLC25A27	O95847	323 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	ICAM1	P05362	532 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	CDC27	P30260	824 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	MCM2	P49736	904 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	SNAP25	P60880	206 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	LACTB	P83111	547 aa	Predicted RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	ARHGEF6	Q15052	776 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	SNRNP48	Q6IEG0	339 aa	Known RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	CPLX2	Q6PUV4	134 aa	Known RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	RIOX2	Q8IUF8	465 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	SRBD1	Q8N5C6	995 aa	Known RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	SHCBP1	Q8NEM2	672 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	ZNF296	Q8WUU4	475 aa	Predicted RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	RRP36	Q96EU6	259 aa	Known RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	ZSCAN31	Q96LW9	406 aa	Predicted RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	RAVER2	Q9HCJ3	691 aa	Known RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	SEC63	Q9UGP8	760 aa	Known RBP	15.26	■□□□□ 0.03
SF1-206	ENST00000413725	CCPG1	Q9ULG6	757 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	ZNF236	Q9UL36	1845 aa		15.26	■□□□□ 0.03
SF1-206	ENST00000413725	CNTNAP5	Q8WYK1	1306 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	ZBTB5	O15062	677 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	CYTH3	O43739	400 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	PFKFB2	O60825	505 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	MAPK4	P31152	587 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	SLC4A3	P48751	1232 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	FCGRT	P55899	365 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	TRAF1	Q13077	416 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	QRICH1	Q2TAL8	776 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725		Q3C1V9	767 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	TKFC	Q3LXA3	575 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	WDR78	Q5VTH9	848 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	NBPF11	Q86T75	865 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	NCAPG2	Q86XI2	1143 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	HOMER1	Q86YM7	354 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	CMTR1	Q8N1G2	835 aa	Known RBP	15.25	■□□□□ 0.03
SF1-206	ENST00000413725	CCDC82	Q8N4S0	544 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	MTMR8	Q96EF0	704 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	MOV10L1	Q9BXT6	1211 aa	Known RBP	15.25	■□□□□ 0.03
SF1-206	ENST00000413725	MROH8	Q9H579	483 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	NCOA5	Q9HCD5	579 aa	Known RBP	15.25	■□□□□ 0.03
SF1-206	ENST00000413725	SH2B1	Q9NRF2	756 aa	Predicted RBP	15.25	■□□□□ 0.03
SF1-206	ENST00000413725	FAM217B	Q9NTX9	383 aa	Predicted RBP	15.25	■□□□□ 0.03
SF1-206	ENST00000413725	MCM3AP	O60318	1980 aa		15.25	■□□□□ 0.03
SF1-206	ENST00000413725	ZNF536	O15090	1300 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	PNMA6F	A0A0J9YX94	578 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	CDKL5	O76039	1030 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	ADD1	P35611	737 aa	Known RBP	15.24	■□□□□ 0.03
SF1-206	ENST00000413725	PSMC4	P43686	418 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	LBX1	P52954	281 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	ME3	Q16798	604 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	FBXO11	Q86XK2	927 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	CD99L2	Q8TCZ2	262 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	PIBF1	Q8WXW3	757 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	AGBL1	Q96MI9	1066 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	PIGS	Q96S52	555 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	PORCN	Q9H237	461 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	RBM27	Q9P2N5	1060 aa	Known RBP	15.24	■□□□□ 0.03
SF1-206	ENST00000413725	IVNS1ABP	Q9Y6Y0	642 aa		15.24	■□□□□ 0.03
SF1-206	ENST00000413725	TNPO2	O14787	897 aa	Known RBP	15.23	■□□□□ 0.03
SF1-206	ENST00000413725	FMNL1	O95466	1100 aa	Predicted RBP	15.23	■□□□□ 0.03
SF1-206	ENST00000413725	ALAS1	P13196	640 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	IFNAR1	P17181	557 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	ERCC3	P19447	782 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	AKAP17A	Q02040	695 aa	Known RBP	15.23	■□□□□ 0.03
SF1-206	ENST00000413725	SCRN1	Q12765	414 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	SLC35G1	Q2M3R5	365 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	TRIM22	Q8IYM9	498 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	CHST13	Q8NET6	341 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	GTF3C6	Q969F1	213 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	COA7	Q96BR5	231 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	AMN	Q9BXJ7	453 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	EFCC1	Q9HA90	598 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	RNF146	Q9NTX7	359 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	FBXO40	Q9UH90	709 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	LCT	P09848	1927 aa		15.23	■□□□□ 0.03
SF1-206	ENST00000413725	ABCB11	O95342	1321 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	ECM2	O94769	699 aa	Predicted RBP	15.22	■□□□□ 0.03
SF1-206	ENST00000413725	LARGE1	O95461	756 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	GNRH1	P01148	92 aa		15.22	■□□□□ 0.03

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms