RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PPP1R12CQ9BZL4 782 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 INTS9Q9NV88 658 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 PDE8AO60658 829 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 PARP1P09874 1014 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 H2AFXP16104 143 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 KLHL7Q8IXQ5 586 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 ANO9A1A5B4 782 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC62Q6P9F0 684 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC110Q8TBZ0 833 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 USH1CQ9Y6N9 552 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 FAM169AQ9Y6X4 670 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 RPSAP08865 295 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 STAT1P42224 750 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 NNTQ13423 1086 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC197Q8NCU1 140 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 MCUR1Q96AQ8 359 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 TLR7Q9NYK1 1049 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 SETSIPP0DME0 302 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ARHGEF18Q6ZSZ5 1173 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 STK38LQ9Y2H1 464 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 SART1O43290 800 aaKnown RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 DDAH1O94760 285 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 FAM13AO94988 1023 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 GYS2P54840 703 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 CTDSPL2Q05D32 466 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 NAA30Q147X3 362 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PAXIP1Q6ZW49 1069 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 FUCA2Q9BTY2 467 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 KCND1Q9NSA2 647 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PARP3Q9Y6F1 533 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 EVI5O60447 810 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PLCG2P16885 1265 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 RNASE9P60153 205 aaKnown RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ZBED6P86452 979 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 RASGRP2Q7LDG7 609 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 CCDC63Q8NA47 563 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 NYXQ9GZU5 481 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ARPP21Q9UBL0 812 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 SUN1O94901 812 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 IFNAR1P17181 557 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 STX2P32856 288 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 E2F4Q16254 413 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ARL6IP4Q66PJ3 421 aaKnown RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 CALR3Q96L12 384 aaKnown RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PLEKHA4Q9H4M7 779 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 SAMM50Q9Y512 469 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 MYO5BQ9ULV0 1848 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 CIB2O75838 187 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 SASH1O94885 1247 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 DZIP3Q86Y13 1208 aaKnown RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 BLIDQ8IZY5 108 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 NCAPGQ9BPX3 1015 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 TRIM37O94972 964 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 SLC4A8Q2Y0W8 1093 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 CCDC105Q8IYK2 499 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 FMO2Q99518 471 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 TMEM110-MUSTN1A8MSY1 372 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 SMIM24O75264 130 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ZNF594Q96JF6 807 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PLIN2Q99541 437 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 MAST3O60307 1309 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ITIH6Q6UXX5 1313 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PALLDQ8WX93 1383 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 RASSF7Q02833 373 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 FAM114A2Q9NRY5 505 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 LRWD1Q9UFC0 647 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PPARAQ07869 468 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 TSNARE1Q96NA8 513 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ADGRG1Q9Y653 693 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 A0A1W2PQC6 194 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 PODXLO00592 558 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ZNF365Q70YC5 407 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ELOA2Q8IYF1 753 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 ZBTB38Q8NAP3 1195 aaPredicted RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 STAMQ92783 540 aa5.27□□□□□ -1.57
CSMD3-203ENST00000343508 GEMIN8Q9NWZ8 242 aaKnown RBP5.27□□□□□ -1.57
CSMD3-203ENST00000343508 A0A087WWV3 80 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 MEFVO15553 781 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 TXKP42681 527 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 NONOQ15233 471 aaKnown RBP eCLIP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 RBM43Q6ZSC3 357 aaKnown RBP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 ACRBPQ8NEB7 543 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 MIPOL1Q8TD10 442 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 M0R2C6 588 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 HEXIM1O94992 359 aaKnown RBP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 PEX19P40855 299 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 MRPL12P52815 198 aaKnown RBP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 BIRC3Q13489 604 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 ZCCHC17Q9NP64 241 aaKnown RBP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 KLC4Q9NSK0 619 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 TBX22Q9Y458 520 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 FHOD1Q9Y613 1164 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 KIDINS220Q9ULH0 1771 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 PREX1Q8TCU6 1659 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 SPOPO43791 374 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 TROVE2P10155 538 aaKnown RBP eCLIP5.26□□□□□ -1.57
CSMD3-203ENST00000343508 SCG2P13521 617 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 MAP7Q14244 749 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 MYOCDQ8IZQ8 938 aa5.26□□□□□ -1.57
CSMD3-203ENST00000343508 LARSQ9P2J5 1176 aaKnown RBP5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms