RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CHURC1Q8WUH1 139 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 DCAF4Q8WV16 495 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 KAT14Q9H8E8 782 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 FRMPD2Q68DX3 1309 aaPredicted RBP11.56□□□□□ -0.56
CLN3-261ENST00000637686 HTTP42858 3142 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 PLA2G6O60733 806 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 ZBED4O75132 1171 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 ZKSCAN1P17029 563 aaPredicted RBP11.55□□□□□ -0.56
CLN3-261ENST00000637686 CYP2B6P20813 491 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 STAT3P40763 770 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 IRF5Q13568 498 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 KRT32Q14532 448 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 SEC23AQ15436 765 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 IFIT1BQ5T764 474 aaKnown RBP11.55□□□□□ -0.56
CLN3-261ENST00000637686 NBPF11Q86T75 865 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 FAM160B2Q86V87 743 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 NCAPG2Q86XI2 1143 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 MB21D2Q8IYB1 491 aaPredicted RBP11.55□□□□□ -0.56
CLN3-261ENST00000637686 PNMA1Q8ND90 353 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 ARMC5Q96C12 935 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 NUDT12Q9BQG2 462 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 TM6SF1Q9BZW5 370 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 GPCPD1Q9NPB8 672 aa11.55□□□□□ -0.56
CLN3-261ENST00000637686 ZNF214Q9UL59 606 aaPredicted RBP11.55□□□□□ -0.56
CLN3-261ENST00000637686 CTDP1Q9Y5B0 961 aaPredicted RBP11.55□□□□□ -0.56
CLN3-261ENST00000637686 COL11A1P12107 1806 aaPredicted RBP11.55□□□□□ -0.56
CLN3-261ENST00000637686 PLXNB2O15031 1838 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 IFIT3O14879 490 aaKnown RBP11.54□□□□□ -0.56
CLN3-261ENST00000637686 ADCY3O60266 1144 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SLC25A27O95847 323 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 MYCP01106 439 aaPredicted RBP11.54□□□□□ -0.56
CLN3-261ENST00000637686 SNHG28P0DPA3 235 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 ELNP15502 786 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 PTPREP23469 700 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 GRK4P32298 578 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SLC16A2P36021 539 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SLC4A3P48751 1232 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 ANTXR2P58335 489 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SNAP25P60880 206 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 ZNF543Q08ER8 600 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 RABEP1Q15276 862 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 MORN1Q5T089 497 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 RIOX2Q8IUF8 465 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 CPXCR1Q8N123 301 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SLAIN1Q8ND83 568 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SHCBP1Q8NEM2 672 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SOCS4Q8WXH5 440 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 MROH8Q9H579 483 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 SLC38A10Q9HBR0 1119 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 RAVER2Q9HCJ3 691 aaKnown RBP11.54□□□□□ -0.56
CLN3-261ENST00000637686 BIN2Q9UBW5 565 aaPredicted RBP11.54□□□□□ -0.56
CLN3-261ENST00000637686 PRR12Q9ULL5 1215 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 RBM19Q9Y4C8 960 aaKnown RBP11.54□□□□□ -0.56
CLN3-261ENST00000637686 IVNS1ABPQ9Y6Y0 642 aa11.54□□□□□ -0.56
CLN3-261ENST00000637686 ERICH2A1L162 156 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 SLC15A5A6NIM6 579 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 GOLGA8HP0CJ92 632 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 RGS2P41220 211 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 COL9A3Q14050 684 aaPredicted RBP11.53□□□□□ -0.56
CLN3-261ENST00000637686 GRB14Q14449 540 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 SYDE2Q5VT97 1194 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 SNRNP48Q6IEG0 339 aaKnown RBP11.53□□□□□ -0.56
CLN3-261ENST00000637686 RASEFQ8IZ41 740 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 IGDCC4Q8TDY8 1250 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 PXYLP1Q8TE99 480 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 USP6NLQ92738 828 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 ZNF333Q96JL9 665 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 KIF2CQ99661 725 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 TEX13BQ9BXU2 312 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 SENP2Q9HC62 589 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 RIPK3Q9Y572 518 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 CENPFP49454 3210 aa11.53□□□□□ -0.56
CLN3-261ENST00000637686 ATP2A1O14983 1001 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 PRC1O43663 620 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 STRNO43815 780 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 HMGB1P09429 215 aaKnown RBP11.52□□□□□ -0.57
CLN3-261ENST00000637686 FDX1P10109 184 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 PSMA5P28066 241 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 MCM5P33992 734 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 SOX10P56693 466 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 MAP2K5Q13163 448 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 WTAPQ15007 396 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 SART3Q15020 963 aaKnown RBP11.52□□□□□ -0.57
CLN3-261ENST00000637686 TMEM67Q5HYA8 995 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 CCDC174Q6PII3 467 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 BTNL9Q6UXG8 535 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 UBA5Q9GZZ9 404 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 GPHNQ9NQX3 736 aaPredicted RBP11.52□□□□□ -0.57
CLN3-261ENST00000637686 SNX14Q9Y5W7 946 aa11.52□□□□□ -0.57
CLN3-261ENST00000637686 COBLO75128 1261 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 INHAP05111 366 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 PARP1P09874 1014 aaKnown RBP11.51□□□□□ -0.57
CLN3-261ENST00000637686 FCER1AP12319 257 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 XRCC5P13010 732 aaKnown RBP11.51□□□□□ -0.57
CLN3-261ENST00000637686 ADORA2AP29274 412 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 COPB2P35606 906 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 ANP32AP39687 249 aaKnown RBP11.51□□□□□ -0.57
CLN3-261ENST00000637686 OAZ1P54368 228 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 UBXN2AP68543 259 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 MTFR1Q15390 333 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms