RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FHOD1Q9Y613 1164 aa7.1□□□□□ -1.27
SMCHD1-204ENST00000581226 OAS3Q9Y6K5 1087 aaKnown RBP7.1□□□□□ -1.27
SMCHD1-204ENST00000581226 U2SURPO15042 1029 aaKnown RBP7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 PPM1BO75688 479 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 GJB6O95452 261 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 PCBP3P57721 371 aaKnown RBP7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 RBL2Q08999 1139 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 DDR2Q16832 855 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 FIBCD1Q8N539 461 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 APBA2Q99767 749 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 NOL6Q9H6R4 1146 aaKnown RBP7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 SUSD2Q9UGT4 822 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 SUGT1Q9Y2Z0 365 aa7.09□□□□□ -1.27
SMCHD1-204ENST00000581226 A0A087WZG4 1122 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 SYPP08247 313 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 NAT2P11245 290 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 PPP2R5DQ14738 602 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 ZNF792Q3KQV3 632 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 RNF111Q6ZNA4 994 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 ADCY4Q8NFM4 1077 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 SYTL4Q96C24 671 aaPredicted RBP7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 FOXP3Q9BZS1 431 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 MBNL3Q9NUK0 354 aaKnown RBP7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 SLAMF8Q9P0V8 285 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 ADAMTS6Q9UKP5 1117 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 TCFL5Q9UL49 500 aa7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 DIS3Q9Y2L1 958 aaKnown RBP7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 SF3B6Q9Y3B4 125 aaKnown RBP7.08□□□□□ -1.28
SMCHD1-204ENST00000581226 GSNP06396 782 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 RNASE1P07998 156 aaKnown RBP7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 CTSKP43235 329 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 ZNF143P52747 638 aaPredicted RBP7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 NBPF6Q5VWK0 638 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 CWF19L1Q69YN2 538 aaKnown RBP7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 CRTC3Q6UUV7 619 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 LINC00116Q8NCU8 138 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 PMFBP1Q8TBY8 1022 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 PPP1R14AQ96A00 147 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 NBPF4Q96M43 638 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 ALPK1Q96QP1 1244 aa7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 DNAJC2Q99543 621 aaKnown RBP7.07□□□□□ -1.28
SMCHD1-204ENST00000581226 H0Y8X5 98 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 FKTNO75072 461 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 RPL10P27635 214 aaKnown RBP7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 BMP8BP34820 402 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 TEKQ02763 1124 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 SV2CQ496J9 727 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 SOGA3Q5TF21 947 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 MRM1Q6IN84 353 aaKnown RBP7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 EEPD1Q7L9B9 569 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 KRTAP19-1Q8IUB9 90 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 ZDHHC15Q96MV8 337 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 GOLGA2P5Q9HBQ8 144 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 APEX2Q9UBZ4 518 aa7.06□□□□□ -1.28
SMCHD1-204ENST00000581226 DNAJC25-GNG10A0A024R161 153 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 SUSD5O60279 629 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 VAV1P15498 845 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 RALGPS1Q5JS13 557 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 ARHGEF39Q8N4T4 335 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 RCC1LQ96I51 464 aaKnown RBP7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 ADAMTS10Q9H324 1103 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 RC3H2Q9HBD1 1191 aaKnown RBP7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 SIRPGQ9P1W8 387 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 AKT3Q9Y243 479 aa7.05□□□□□ -1.28
SMCHD1-204ENST00000581226 NOP2P46087 812 aaKnown RBP7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 POU4F1Q01851 419 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 WAPLQ7Z5K2 1190 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 ZNF513Q8N8E2 541 aaPredicted RBP7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 LRRN4CLQ8ND94 238 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 BVESQ8NE79 360 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 UBXN4Q92575 508 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 CCDC120Q96HB5 630 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 LRP2BPQ9P2M1 347 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 CGGBP1Q9UFW8 167 aaPredicted RBP7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 ZMYM5Q9UJ78 669 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 TMEM59LQ9UK28 342 aa7.04□□□□□ -1.28
SMCHD1-204ENST00000581226 CCDC85CA6NKD9 419 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 NOP56O00567 594 aaKnown RBP7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 VAMP4O75379 141 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 ZNF205O95201 554 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 GSTM1P09488 218 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 HK2P52789 917 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 CDADC1Q9BWV3 514 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 SLC12A9Q9BXP2 914 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 ADGRE2Q9UHX3 823 aa7.03□□□□□ -1.28
SMCHD1-204ENST00000581226 TMEM82A0PJX8 343 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 CD3EP07766 207 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 DUSP4Q13115 394 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 POMZP3Q6PJE2 187 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 ZPBP2Q6X784 338 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 CBLL1Q75N03 491 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 CRACR2BQ8N4Y2 399 aaPredicted RBP7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 EPN3Q9H201 632 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 CTNND2Q9UQB3 1225 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 ZNF281Q9Y2X9 895 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 EMC9Q9Y3B6 208 aa7.02□□□□□ -1.29
SMCHD1-204ENST00000581226 AGRPO00253 132 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 KCNH1O95259 989 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 ITGAVP06756 1048 aa7.01□□□□□ -1.29
SMCHD1-204ENST00000581226 ZGLP1P0C6A0 271 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms