RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	KLHDC4	Q8TBB5	520 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	TRPM4	Q8TD43	1214 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	N4BP2L2	Q92802	583 aa	Predicted RBP	4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	BHMT	Q93088	406 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	TRMT2B	Q96GJ1	504 aa	Known RBP	4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	NUDT12	Q9BQG2	462 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	FAM167B	Q9BTA0	163 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	METTL22	Q9BUU2	404 aa	Predicted RBP	4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	ZBTB3	Q9H5J0	574 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	IL1RAPL2	Q9NP60	686 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	HYPK	Q9NX55	129 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	TMEM260	Q9NX78	707 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	SEL1L	Q9UBV2	794 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	USP25	Q9UHP3	1055 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	SALL3	Q9BXA9	1300 aa		4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	IBTK	Q9P2D0	1353 aa	Predicted RBP	4.09	□□□□□ -1.75
SMG6-208	ENST00000570874	RASSF10	A6NK89	507 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	USP17L5	A8MUK1	530 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	hCG_1984214	I3L0E3	225 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	GRM8	O00222	908 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	UTY	O14607	1347 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SRGAP3	O43295	1099 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	WIPF1	O43516	503 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SNX2	O60749	519 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	IPO7	O95373	1038 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	F2	P00734	622 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	GNAI3	P08754	354 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	MYH8	P13535	1937 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	PAX7	P23759	505 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	MAPK8	P45983	427 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ST13	P50502	369 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	AFF2	P51816	1311 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	CASP7	P55210	303 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SH3BGR	P55822	239 aa	Predicted RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ATP2B2	Q01814	1243 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	FKBP4	Q02790	459 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	BIRC3	Q13489	604 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	PICALM	Q13492	652 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ITPK1	Q13572	414 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	GCKR	Q14397	625 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	HLF	Q16534	295 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	TTC22	Q5TAA0	569 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	UTP14C	Q5TAP6	766 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	KIAA1614	Q5VZ46	1190 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ISM2	Q6H9L7	571 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	MZT2B	Q6NZ67	158 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	MZT2A	Q6P582	158 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	C16orf54	Q6UWD8	224 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	UBE3B	Q7Z3V4	1068 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	MAATS1	Q7Z4T9	603 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	DGKH	Q86XP1	1220 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	NUTM1	Q86Y26	1132 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ERC1	Q8IUD2	1116 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	PLPP6	Q8IY26	295 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SIX5	Q8N196	739 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SYNE4	Q8N205	404 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	CLASRP	Q8N2M8	674 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SSH3	Q8TE77	659 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	SPIRE2	Q8WWL2	714 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	NGLY1	Q96IV0	654 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	AGAP3	Q96P47	875 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	AP1M1	Q9BXS5	423 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ABCG4	Q9H172	646 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	BICC1	Q9H694	974 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	CHCHD3	Q9NX63	227 aa	Known RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ZIM2	Q9NZV7	527 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	MCM8	Q9UJA3	840 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	ZBTB1	Q9Y2K1	713 aa		4.08	□□□□□ -1.76
SMG6-208	ENST00000570874		V9GY48	417 aa	Predicted RBP	4.08	□□□□□ -1.76
SMG6-208	ENST00000570874	COL11A2	P13942	1736 aa	Predicted RBP	4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	LRP5	O75197	1615 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	ATRN	O75882	1429 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	FAM25E	A8MYX2	175 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874		C9IYK1	514 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	SURF6	O75683	361 aa	Known RBP	4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	WFS1	O76024	890 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	RHOBTB3	O94955	611 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	DDX58	O95786	925 aa	Known RBP	4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	CYP19A1	P11511	503 aa	Predicted RBP	4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	SKI	P12755	728 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	GYS1	P13807	737 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	EPB42	P16452	691 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	TNFAIP3	P21580	790 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	ABCD1	P33897	745 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	GJA5	P36382	358 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	UBA7	P41226	1012 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	RFX5	P48382	616 aa	Predicted RBP	4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	RAB33A	Q14088	237 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	SLMAP	Q14BN4	828 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	MLC1	Q15049	377 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	PTPN14	Q15678	1187 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	SEPT7	Q16181	437 aa	Known RBP	4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	GFOD2	Q3B7J2	385 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	TKFC	Q3LXA3	575 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	BMP2KL	Q5H9B9	411 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	DACT2	Q5SW24	774 aa		4.07	□□□□□ -1.76
SMG6-208	ENST00000570874	MFSD4B	Q5TF39	518 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms