RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 USP31Q70CQ4 1352 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 SPATA31A6Q5VVP1 1343 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 P4HA1P13674 534 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 FERP16591 822 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 TMOD1P28289 359 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 RNF26Q9BY78 433 aaPredicted RBP15.65■□□□□ 0.1
USP3-204ENST00000540797 ADD3Q9UEY8 706 aaKnown RBP15.65■□□□□ 0.1
USP3-204ENST00000540797 H0YCG3 227 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 STAT2P52630 851 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 UBXN2AP68543 259 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 ADPGKQ9BRR6 497 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 CBX8Q9HC52 389 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 IGBP1P78318 339 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 SLC10A4Q96EP9 437 aa15.65■□□□□ 0.1
USP3-204ENST00000540797 K7ENM7 598 aa15.64■□□□□ 0.1
USP3-204ENST00000540797 POLGP54098 1239 aaPredicted RBP15.64■□□□□ 0.1
USP3-204ENST00000540797 TNNC1P63316 161 aa15.64■□□□□ 0.1
USP3-204ENST00000540797 VPS72Q15906 364 aa15.64■□□□□ 0.1
USP3-204ENST00000540797 TRMT44Q8IYL2 757 aaKnown RBP15.64■□□□□ 0.1
USP3-204ENST00000540797 CYP2D7A0A087X1C5 515 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 GNA14O95837 355 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 SYNE4Q8N205 404 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 DAPK3O43293 454 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 PTGDRQ13258 359 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 EPHA10Q5JZY3 1008 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 CCDC84Q86UT8 332 aaPredicted RBP15.64■□□□□ 0.09
USP3-204ENST00000540797 PLCD4Q9BRC7 762 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 RTEL1Q9NZ71 1219 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 CYP4A11Q02928 519 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 MKRN3Q13064 507 aaKnown RBP15.64■□□□□ 0.09
USP3-204ENST00000540797 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.64■□□□□ 0.09
USP3-204ENST00000540797 FAM178BQ8IXR5 827 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 PANK4Q9NVE7 773 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 LARSQ9P2J5 1176 aaKnown RBP15.64■□□□□ 0.09
USP3-204ENST00000540797 BMS1Q14692 1282 aaKnown RBP15.64■□□□□ 0.09
USP3-204ENST00000540797 LRCH2Q5VUJ6 765 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 SYT10Q6XYQ8 523 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 PIGSQ96S52 555 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 PCDHA4Q9UN74 947 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 MTMR6Q9Y217 621 aa15.64■□□□□ 0.09
USP3-204ENST00000540797 FMNL1O95466 1100 aaPredicted RBP15.63■□□□□ 0.09
USP3-204ENST00000540797 MCAMP43121 646 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 SYDE2Q5VT97 1194 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 CELF1Q92879 486 aaKnown RBP15.63■□□□□ 0.09
USP3-204ENST00000540797 NBPF3Q9H094 633 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 ARFGAP3Q9NP61 516 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 TXNDC16Q9P2K2 825 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 SOS2Q07890 1332 aaPredicted RBP15.63■□□□□ 0.09
USP3-204ENST00000540797 MYO3BQ8WXR4 1341 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 CDHR2Q9BYE9 1310 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 PALM3A6NDB9 673 aaPredicted RBP15.63■□□□□ 0.09
USP3-204ENST00000540797 ECE2O60344 883 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 CRKP46108 304 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 YWHAEP62258 255 aaKnown RBP15.63■□□□□ 0.09
USP3-204ENST00000540797 DCUN1D2Q6PH85 259 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 FBXO18Q8NFZ0 1043 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 COL4A3BPQ9Y5P4 624 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 CDK8P49336 464 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 CALCOCO2Q13137 446 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 AP5M1Q9H0R1 490 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 SLU7O95391 586 aaKnown RBP15.63■□□□□ 0.09
USP3-204ENST00000540797 PODNQ7Z5L7 613 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.63■□□□□ 0.09
USP3-204ENST00000540797 CTTNBP2NLQ9P2B4 639 aa15.63■□□□□ 0.09
USP3-204ENST00000540797 ATP2A2P16615 1042 aaKnown RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 LONP1P36776 959 aaKnown RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 ARHGAP44Q17R89 818 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 SEPT14Q6ZU15 432 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 GOLGA5Q8TBA6 731 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 PAIP2Q9BPZ3 127 aaKnown RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 ZNF577Q9BSK1 485 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 CSRNP2Q9H175 543 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 MTRF1LQ9UGC7 380 aaKnown RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 FAM169AQ9Y6X4 670 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 LRRIQ4A6NIV6 560 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 KLHL30Q0D2K2 578 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 LRMPQ12912 555 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 DMP1Q13316 513 aaPredicted RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 AOC3Q16853 763 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 TBC1D10BQ4KMP7 808 aaPredicted RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 CD209Q9NNX6 404 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 RGS12O14924 1447 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 TRPM1Q7Z4N2 1603 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 NR1I2O75469 434 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 RNF187Q5TA31 235 aaPredicted RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 MICALCLQ6ZW33 695 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 NAP1L3Q99457 506 aaPredicted RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 RBSNQ9H1K0 784 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 GAS8O95995 478 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 XRCC5P13010 732 aaKnown RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 CBX1P83916 185 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 CCDC14Q49A88 953 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 USP17L2Q6R6M4 530 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 CCDC25Q86WR0 208 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 IFT81Q8WYA0 676 aa15.62■□□□□ 0.09
USP3-204ENST00000540797 CLTCQ00610 1675 aaKnown RBP15.62■□□□□ 0.09
USP3-204ENST00000540797 CMA1P23946 247 aa15.61■□□□□ 0.09
USP3-204ENST00000540797 CACNB3P54284 484 aa15.61■□□□□ 0.09
USP3-204ENST00000540797 YARSP54577 528 aaKnown RBP15.61■□□□□ 0.09
USP3-204ENST00000540797 GPIHBP1Q8IV16 184 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms