RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 GFOD1Q9NXC2 390 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 ZNRF3Q9ULT6 936 aa6.25□□□□□ -1.41
VPS13A-213ENST00000539950 CTSKP43235 329 aa6.24□□□□□ -1.41
VPS13A-213ENST00000539950 KIR2DL1P43626 348 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-213ENST00000539950 KIR2DL2P43627 348 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-213ENST00000539950 CEP128Q6ZU80 1094 aa6.24□□□□□ -1.41
VPS13A-213ENST00000539950 ZBTB7CA1YPR0 619 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 C9IYK1 514 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 SHOXO15266 292 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 NRDCO43847 1150 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 PEX10O60683 326 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 MFAP1P55081 439 aaKnown RBP6.23□□□□□ -1.41
VPS13A-213ENST00000539950 LINC00310P59036 64 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 DLG4P78352 724 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 AUHQ13825 339 aaKnown RBP6.23□□□□□ -1.41
VPS13A-213ENST00000539950 PLCD4Q9BRC7 762 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 SGPP1Q9BX95 441 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 METTL5Q9NRN9 209 aaKnown RBP6.23□□□□□ -1.41
VPS13A-213ENST00000539950 FBXL21Q9UKT6 434 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 PCDHB12Q9Y5F1 795 aa6.23□□□□□ -1.41
VPS13A-213ENST00000539950 RTP1P59025 263 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 RACK1P63244 317 aaKnown RBP6.22□□□□□ -1.41
VPS13A-213ENST00000539950 KIR3DS1Q14943 382 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 SLC14A2Q15849 920 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 ADGRF1Q5T601 910 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 INTS3Q68E01 1043 aaKnown RBP6.22□□□□□ -1.41
VPS13A-213ENST00000539950 SIAH1Q8IUQ4 282 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 GCM1Q9NP62 436 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 SUCOQ9UBS9 1254 aaKnown RBP6.22□□□□□ -1.41
VPS13A-213ENST00000539950 PPT2Q9UMR5 302 aa6.22□□□□□ -1.41
VPS13A-213ENST00000539950 TEX51A0A1B0GUA7 166 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 FADS2P1A8MWK0 482 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 SDHBP21912 280 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 CEBPAP49715 358 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-213ENST00000539950 TDRD10Q5VZ19 366 aaKnown RBP6.21□□□□□ -1.42
VPS13A-213ENST00000539950 CIAPIN1Q6FI81 312 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 CRTC3Q6UUV7 619 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 C7orf61Q8IZ16 206 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 FCRL2Q96LA5 508 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-213ENST00000539950 DHRS1Q96LJ7 313 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 FERD3LQ96RJ6 166 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 ERVK13-1Q9NX77 482 aa6.21□□□□□ -1.42
VPS13A-213ENST00000539950 GPR55Q9Y2T6 319 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-213ENST00000539950 OR14I1A6ND48 311 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 SEMA7AO75326 666 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 ZNF205O95201 554 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 VAV1P15498 845 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 BMP8BP34820 402 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 ZYXQ15942 572 aaKnown RBP6.2□□□□□ -1.42
VPS13A-213ENST00000539950 HSF5Q4G112 596 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-213ENST00000539950 FBXW10Q5XX13 1052 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 TMEM132EQ6IEE7 984 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 RUFY4Q6ZNE9 571 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 PPFIBP1Q86W92 1011 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 AMIGO3Q86WK7 504 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 CCDC144CPQ8IYA2 1237 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 CDADC1Q9BWV3 514 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 IRF2BPLQ9H1B7 796 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 CRTAC1Q9NQ79 661 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 AP5S1Q9NUS5 200 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 TNFRSF10DQ9UBN6 386 aa6.2□□□□□ -1.42
VPS13A-213ENST00000539950 DDX41Q9UJV9 622 aaKnown RBP6.2□□□□□ -1.42
VPS13A-213ENST00000539950 NUAK1O60285 661 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 RECKO95980 971 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 IMPDH2P12268 514 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 PNLIPP16233 465 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 PMS1P54277 932 aaKnown RBP6.19□□□□□ -1.42
VPS13A-213ENST00000539950 AXDND1Q5T1B0 1012 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-213ENST00000539950 DCAF15Q66K64 600 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 TAB3Q8N5C8 712 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-213ENST00000539950 RNF34Q969K3 372 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 TM9SF2Q99805 663 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 PRR13Q9NZ81 148 aa6.19□□□□□ -1.42
VPS13A-213ENST00000539950 RTP2Q5QGT7 225 aa6.18□□□□□ -1.42
VPS13A-213ENST00000539950 UNC5AQ6ZN44 842 aa6.18□□□□□ -1.42
VPS13A-213ENST00000539950 SLCO6A1Q86UG4 719 aa6.18□□□□□ -1.42
VPS13A-213ENST00000539950 LSRQ86X29 649 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-213ENST00000539950 RBBP8NLQ8NC74 664 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-213ENST00000539950 TMEM52Q8NDY8 209 aa6.18□□□□□ -1.42
VPS13A-213ENST00000539950 DSCC1Q9BVC3 393 aa6.18□□□□□ -1.42
VPS13A-213ENST00000539950 FAM86C1Q9NVL1 165 aa6.18□□□□□ -1.42
VPS13A-213ENST00000539950 MBD1Q9UIS9 605 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-213ENST00000539950 KRTAP9-7A8MTY7 169 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 TP53P04637 393 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-213ENST00000539950 GSNP06396 782 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 GUCY2CP25092 1073 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 ZNF445P59923 1031 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 GALNT18Q6P9A2 607 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 CCDC81Q6ZN84 652 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 SLC12A9Q9BXP2 914 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 TAF6LQ9Y6J9 622 aa6.17□□□□□ -1.42
VPS13A-213ENST00000539950 WTIPA6NIX2 430 aaPredicted RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 H0Y8X5 98 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 HRKO00198 91 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 SCAMP3O14828 347 aaKnown RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 PRKCAP17252 672 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 ENDOUP21128 410 aaKnown RBP6.16□□□□□ -1.42
VPS13A-213ENST00000539950 VIPR1P32241 457 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 EPHB3P54753 998 aa6.16□□□□□ -1.42
VPS13A-213ENST00000539950 ERVFRD-1P60508 538 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms