RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 DUSP15Q9H1R2 295 aaPredicted RBP4.84□□□□□ -1.63
DEPDC1-204ENST00000489862 KBTBD4Q9NVX7 518 aa4.84□□□□□ -1.63
DEPDC1-204ENST00000489862 KLHL3Q9UH77 587 aa4.84□□□□□ -1.63
DEPDC1-204ENST00000489862 RBM47A0AV96 593 aaKnown RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 TLR3O15455 904 aaKnown RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 DNAJA2O60884 412 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 FZD7O75084 574 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 YARSP54577 528 aaKnown RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 PWP1Q13610 501 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 CREG2Q8IUH2 290 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 PIWIL2Q8TC59 973 aaKnown RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 DHX38Q92620 1227 aaKnown RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 SYTL4Q96C24 671 aaPredicted RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 BCL2L13Q9BXK5 485 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 PRR36Q9H6K5 1346 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 HTR3BO95264 441 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 TPP2P29144 1249 aaPredicted RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 MPP2Q14168 576 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 FBXL19Q6PCT2 694 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 ERMP1Q7Z2K6 904 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 REC114Q7Z4M0 266 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 SPPL2CQ8IUH8 684 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 SLFN12Q8IYM2 578 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 DTWD2Q8NBA8 298 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 GIPC2Q8TF65 315 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 C1QTNF3Q9BXJ4 246 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 SP110Q9HB58 689 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 EPB41L4AQ9HCS5 686 aaPredicted RBP4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 USP40Q9NVE5 1235 aa4.83□□□□□ -1.64
DEPDC1-204ENST00000489862 TNNI2P48788 182 aa4.82□□□□□ -1.64
DEPDC1-204ENST00000489862 FAM196AQ6ZSG2 479 aa4.82□□□□□ -1.64
DEPDC1-204ENST00000489862 DHX37Q8IY37 1157 aaKnown RBP4.82□□□□□ -1.64
DEPDC1-204ENST00000489862 MRRFQ96E11 262 aaKnown RBP4.82□□□□□ -1.64
DEPDC1-204ENST00000489862 IRS4O14654 1257 aaPredicted RBP4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 ATXN1P54253 815 aaKnown RBP4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 GAB4Q2WGN9 574 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 OLFML2BQ68BL8 750 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 PHACTR4Q8IZ21 702 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 RNF141Q8WVD5 230 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 CCDC74BQ96LY2 380 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 KIF2CQ99661 725 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 GPR62Q9BZJ7 368 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 TRIT1Q9H3H1 467 aaKnown RBP4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 KCNH3Q9ULD8 1083 aa4.81□□□□□ -1.64
DEPDC1-204ENST00000489862 ITGAEP38570 1179 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 EIF4A3P38919 411 aaKnown RBP4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 EPHB3P54753 998 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 MRPL58Q14197 206 aaKnown RBP4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 ZNF326Q5BKZ1 582 aaKnown RBP4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 FAM129CQ86XR2 697 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 TTC9BQ8N6N2 239 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 KREMEN1Q96MU8 473 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 BRMS1Q9HCU9 246 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 GPATCH2Q9NW75 528 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 DUSP13Q9UII6 198 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 GGT7Q9UJ14 662 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 GPR160Q9UJ42 338 aa4.8□□□□□ -1.64
DEPDC1-204ENST00000489862 SHISA3A0PJX4 238 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 GREM1O60565 184 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ZNF20P17024 532 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 CRKP46108 304 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 CHRNEQ04844 493 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 EGR3Q06889 387 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 HNRNPA0Q13151 305 aaKnown RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 TSPYL5Q86VY4 417 aaPredicted RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ZNF575Q86XF7 245 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ZNF296Q8WUU4 475 aaPredicted RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 KCNQ5Q9NR82 932 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 SUPT16HQ9Y5B9 1047 aaKnown RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 PCDHB14Q9Y5E9 798 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 SMARCA5O60264 1052 aaPredicted RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ITGB3P05106 788 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ZNF16P17020 682 aaPredicted RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 GBP1P32455 592 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 CWF19L2Q2TBE0 894 aaKnown RBP4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ARSHQ5FYA8 562 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 Q8N1X5 172 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 VWCEQ96DN2 955 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 PWWP2AQ96N64 755 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 PCED1AQ9H1Q7 454 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ADAMTS1Q9UHI8 967 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 PCDHA11Q9Y5I1 949 aa4.79□□□□□ -1.64
DEPDC1-204ENST00000489862 ZGLP1P0C6A0 271 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 LTKP29376 864 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 CAP1Q01518 475 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 TIGD5Q53EQ6 642 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 CRIP3Q6Q6R5 217 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 HS2ST1Q7LGA3 356 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 FERMT3Q86UX7 667 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 TMEFF1Q8IYR6 380 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 TP53I13Q8NBR0 393 aaPredicted RBP4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 ASPNQ9BXN1 380 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 LRRC3Q9BY71 257 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 UBP1Q9NZI7 540 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 C11orf21Q9P2W6 132 aa4.78□□□□□ -1.64
DEPDC1-204ENST00000489862 ROBO2Q9HCK4 1378 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 TTBK1Q5TCY1 1321 aaPredicted RBP4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 RGS13O14921 159 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 UBOX5O94941 541 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 POLR2BP30876 1174 aaKnown RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms