RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ERLIN2O94905 339 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 UQCRFS1P1P0C7P4 283 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 TCIRG1Q13488 830 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 RRP12Q5JTH9 1297 aaKnown RBP14.92□□□□□ -0.02
USP40-214ENST00000483519 LDHAL6AQ6ZMR3 332 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 STAG1Q8WVM7 1258 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 RIN2Q8WYP3 895 aaPredicted RBP14.92□□□□□ -0.02
USP40-214ENST00000483519 NCAPGQ9BPX3 1015 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 TOMM22Q9NS69 142 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 RIPOR2Q9Y4F9 1068 aa14.92□□□□□ -0.02
USP40-214ENST00000483519 ANO9A1A5B4 782 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 PPFIA1Q13136 1202 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 MCTP2Q6DN12 878 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 CCNI2Q6ZMN8 369 aaPredicted RBP14.91□□□□□ -0.02
USP40-214ENST00000483519 KIAA1328Q86T90 577 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 ZNF654Q8IZM8 581 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 CMTR1Q8N1G2 835 aaKnown RBP14.91□□□□□ -0.02
USP40-214ENST00000483519 NUP133Q8WUM0 1156 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 NELFBQ8WX92 580 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 CAPZA3Q96KX2 299 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 MYCBPQ99417 103 aaPredicted RBP14.91□□□□□ -0.02
USP40-214ENST00000483519 DNAJC7Q99615 494 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 XDHP47989 1333 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 SHTN1A0MZ66 631 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 PPP2R5BQ15173 497 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 RUBCNQ92622 972 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 SECISBP2LQ93073 1101 aaKnown RBP14.91□□□□□ -0.02
USP40-214ENST00000483519 KAT14Q9H8E8 782 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 FAM184BQ9ULE4 1060 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 MYH6P13533 1939 aa14.91□□□□□ -0.02
USP40-214ENST00000483519 A0A1W2PQC6 194 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 TTC26A0AVF1 554 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 GTPBP6O43824 516 aaPredicted RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 MBD4O95243 580 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 IPO7O95373 1038 aaKnown RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 ARID4AP29374 1257 aaPredicted RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 CCT5P48643 541 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 IRAK1P51617 712 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 HERVK_113P62684 666 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 TRIM28Q13263 835 aaKnown RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 SWT1Q5T5J6 900 aaKnown RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 ZNF658Q5TYW1 1059 aaPredicted RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 ZKSCAN3Q9BRR0 538 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 NACAP1Q9BZK3 213 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 CNNM1Q9NRU3 951 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 ZNF831Q5JPB2 1677 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 H7C1D1 291 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 AGPSO00116 658 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 SRGAP2O75044 1071 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 COBLO75128 1261 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 CYLC1P35663 651 aaPredicted RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 USP8P40818 1118 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 SF3B2Q13435 895 aaKnown RBP14.9□□□□□ -0.02
USP40-214ENST00000483519 POTEDQ86YR6 584 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 AMOTL1Q8IY63 956 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 CEP89Q96ST8 783 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 TOGARAM1Q9Y4F4 1720 aa14.9□□□□□ -0.02
USP40-214ENST00000483519 RTL9Q8NET4 1388 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 FAM205CA6NFA0 338 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 GOLGA8KD6RF30 607 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 TDO2P48775 406 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 ZBTB38Q8NAP3 1195 aaPredicted RBP14.89□□□□□ -0.03
USP40-214ENST00000483519 FAM89AQ96GI7 184 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 GDAP1L1Q96MZ0 367 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 PHF20Q9BVI0 1012 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 CAPS2Q9BXY5 557 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 BLZF1Q9H2G9 400 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 RNF41Q9H4P4 317 aaPredicted RBP14.89□□□□□ -0.03
USP40-214ENST00000483519 CAPN11Q9UMQ6 739 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 FAM169AQ9Y6X4 670 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 LGALS16A8MUM7 142 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 GNAT2P19087 354 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 MAP3K12Q12852 859 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 SKIDA1Q1XH10 827 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 CCDC91Q7Z6B0 441 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 MB21D1Q8N884 522 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 STAMQ92783 540 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 UBAC1Q9BSL1 405 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 GNL3LQ9NVN8 582 aaKnown RBP14.89□□□□□ -0.03
USP40-214ENST00000483519 VPS54Q9P1Q0 977 aa14.89□□□□□ -0.03
USP40-214ENST00000483519 A6NNZ2 444 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 ZMYND10O75800 440 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 E2F4Q16254 413 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 TUBB8Q3ZCM7 444 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 TTC38Q5R3I4 469 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 GSPT2Q8IYD1 628 aaKnown RBP14.88□□□□□ -0.03
USP40-214ENST00000483519 TACC3Q9Y6A5 838 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 MYH13Q9UKX3 1938 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 EIF3HO15372 352 aaKnown RBP eCLIP14.88□□□□□ -0.038e-6■■□□□ 11.4
USP40-214ENST00000483519 OPA1O60313 960 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 PARP1P09874 1014 aaKnown RBP14.88□□□□□ -0.03
USP40-214ENST00000483519 ITGA6P23229 1130 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 ATP2C1P98194 919 aaPredicted RBP14.88□□□□□ -0.03
USP40-214ENST00000483519 TTLL11Q8NHH1 800 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 BCAS4Q8TDM0 211 aa14.88□□□□□ -0.03
USP40-214ENST00000483519 AENQ8WTP8 325 aaKnown RBP14.88□□□□□ -0.03
USP40-214ENST00000483519 ZNHIT6Q9NWK9 470 aaKnown RBP14.88□□□□□ -0.03
USP40-214ENST00000483519 ANKRD18BA2A2Z9 1011 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 GSG1L2A8MUP6 293 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 RAD21O60216 631 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms