RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 FLCNQ8NFG4 579 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 TCTN2Q96GX1 697 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 ZDHHC15Q96MV8 337 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 LGR4Q9BXB1 951 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 CCDC113Q9H0I3 377 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 LRP2BPQ9P2M1 347 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 CDK11AQ9UQ88 783 aaPredicted RBP6.3□□□□□ -1.4
USP40-204ENST00000427947 FAM221BA6H8Z2 402 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 H0Y8X5 98 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 CD8BP10966 210 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 CTSKP43235 329 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 LRP8Q14114 963 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 GAB4Q2WGN9 574 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 CWF19L1Q69YN2 538 aaKnown RBP6.29□□□□□ -1.4
USP40-204ENST00000427947 SPRED2Q7Z698 418 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 LRRN4CLQ8ND94 238 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 BVESQ8NE79 360 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 ST13P5Q8NFI4 369 aaPredicted RBP6.29□□□□□ -1.4
USP40-204ENST00000427947 MKL1Q969V6 931 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 EPN3Q9H201 632 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 CGGBP1Q9UFW8 167 aaPredicted RBP6.29□□□□□ -1.4
USP40-204ENST00000427947 AKT3Q9Y243 479 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 SF3B6Q9Y3B4 125 aaKnown RBP6.29□□□□□ -1.4
USP40-204ENST00000427947 PCDHA11Q9Y5I1 949 aa6.29□□□□□ -1.4
USP40-204ENST00000427947 A0A087WZG4 1122 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 AGRPO00253 132 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 NOP56O00567 594 aaKnown RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 ESR1P03372 595 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 GSNP06396 782 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 PCBP3P57721 371 aaKnown RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 EGR3Q06889 387 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 IFRD2Q12894 506 aaPredicted RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 ANGEL2Q5VTE6 544 aaKnown RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 SPATC1Q76KD6 591 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 WFDC3Q8IUB2 231 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 ZNF513Q8N8E2 541 aaPredicted RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 MRFAP1L1Q96HT8 127 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 RCC1LQ96I51 464 aaKnown RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 FOXP3Q9BZS1 431 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 PIF1Q9H611 641 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 CARS2Q9HA77 564 aaKnown RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 PFDN2Q9UHV9 154 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 TCFL5Q9UL49 500 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 DIS3Q9Y2L1 958 aaKnown RBP6.28□□□□□ -1.4
USP40-204ENST00000427947 LMTK3Q96Q04 1460 aa6.28□□□□□ -1.4
USP40-204ENST00000427947 SSU72P8A0A1W2PR75 194 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 KCNH1O95259 989 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 SYPP08247 313 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 ZP2Q05996 745 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 LRP10Q7Z4F1 713 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 ZNF227Q86WZ6 799 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 ARHGEF39Q8N4T4 335 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 CRACR2BQ8N4Y2 399 aaPredicted RBP6.27□□□□□ -1.41
USP40-204ENST00000427947 USHBP1Q8N6Y0 703 aa6.27□□□□□ -1.41
USP40-204ENST00000427947 HYAL3O43820 417 aaPredicted RBP6.26□□□□□ -1.41
USP40-204ENST00000427947 FKTNO75072 461 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 ADAMTS4O75173 837 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 WNT11O96014 354 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 ITGAVP06756 1048 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 CD3EP07766 207 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 BMP8BP34820 402 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 POU4F1Q01851 419 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 SSRP1Q08945 709 aaKnown RBP6.26□□□□□ -1.41
USP40-204ENST00000427947 DPY19L1Q2PZI1 675 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 POMZP3Q6PJE2 187 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 NFXL1Q6ZNB6 911 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 TP53INP2Q8IXH6 220 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 LINC00116Q8NCU8 138 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 DNAJC7Q99615 494 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 PAK6Q9NQU5 681 aaPredicted RBP6.26□□□□□ -1.41
USP40-204ENST00000427947 ZMYM5Q9UJ78 669 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 EMC9Q9Y3B6 208 aa6.26□□□□□ -1.41
USP40-204ENST00000427947 IQCA1LA6NCM1 817 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 TBX1O43435 398 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 VAMP4O75379 141 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 VAV1P15498 845 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 AMPD2Q01433 879 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 GRB10Q13322 594 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 RNF111Q6ZNA4 994 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 TRIM59Q8IWR1 403 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 LRRC47Q8N1G4 583 aaKnown RBP6.25□□□□□ -1.41
USP40-204ENST00000427947 ZNF669Q96BR6 464 aaPredicted RBP6.25□□□□□ -1.41
USP40-204ENST00000427947 MRGPRX3Q96LB0 322 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 PRDM7Q9NQW5 492 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 GPR55Q9Y2T6 319 aaPredicted RBP6.25□□□□□ -1.41
USP40-204ENST00000427947 KDM2BQ8NHM5 1336 aa6.25□□□□□ -1.41
USP40-204ENST00000427947 A0A1W2PQU0 124 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 STXBP3O00186 592 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 DIAPH1O60610 1272 aaKnown RBP6.24□□□□□ -1.41
USP40-204ENST00000427947 ZNF205O95201 554 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 IFNGR1P15260 489 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 RPL10P27635 214 aaKnown RBP6.24□□□□□ -1.41
USP40-204ENST00000427947 TEKQ02763 1124 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 PLCL1Q15111 1095 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 ARTNQ5T4W7 220 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 WAPLQ7Z5K2 1190 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 AGBL5Q8NDL9 886 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 BTN2A2Q8WVV5 523 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 SYTL4Q96C24 671 aaPredicted RBP6.24□□□□□ -1.41
USP40-204ENST00000427947 CDADC1Q9BWV3 514 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms