RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 CCDC42Q96M95 316 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 KANSL2Q9H9L4 492 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 L1RE1Q9UN81 338 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 ATP2C2O75185 946 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 USP5P45974 858 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 GTF2A1P52655 376 aaPredicted RBP13.42□□□□□ -0.26
USHBP1-201ENST00000252597 PMS1P54277 932 aaKnown RBP13.42□□□□□ -0.26
USHBP1-201ENST00000252597 TTC31Q49AM3 519 aaPredicted RBP13.42□□□□□ -0.26
USHBP1-201ENST00000252597 TMTC2Q8N394 836 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 TRIML1Q8N9V2 468 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.42□□□□□ -0.26
USHBP1-201ENST00000252597 XDHP47989 1333 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 CRYBG1Q9Y4K1 1723 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 SARSP49591 514 aaKnown RBP13.42□□□□□ -0.26
USHBP1-201ENST00000252597 GSDMAQ96QA5 445 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 MCM9Q9NXL9 1143 aa13.42□□□□□ -0.26
USHBP1-201ENST00000252597 EIF3CLB5ME19 914 aaKnown RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 ATP8B1O43520 1251 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 PLEKP08567 350 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 KIF5AQ12840 1032 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 SUSD4Q5VX71 490 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 RASGRP2Q7LDG7 609 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 C2CD5Q86YS7 1000 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 PROCA1Q8NCQ7 364 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 IPO4Q8TEX9 1081 aaKnown RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 EIF3CQ99613 913 aaKnown RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 LACRTQ9GZZ8 138 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 ESYT3A0FGR9 886 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 NCK2O43639 380 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 PDE4DQ08499 809 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 DTHD1Q6ZMT9 781 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 NOC4LQ9BVI4 516 aaKnown RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 TSPYL1Q9H0U9 437 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 MLXIPQ9HAP2 919 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 MKNK2Q9HBH9 465 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 NLRC4Q9NPP4 1024 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 LRWD1Q9UFC0 647 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 SIPA1L3O60292 1781 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 GOLGA6CA6NDK9 693 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 ERVV-2B6SEH9 535 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 PSMA7O14818 248 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 KRT86O43790 486 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 IVLP07476 585 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 GOLGA6DP0CG33 693 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 CHRNDQ07001 517 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 NOC3LQ8WTT2 800 aaKnown RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 NAA15Q9BXJ9 866 aaKnown RBP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 SLC39A2Q9NP94 309 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 GOLGA6AQ9NYA3 693 aa13.41□□□□□ -0.26
USHBP1-201ENST00000252597 BCCIPQ9P287 314 aaKnown RBP eCLIP13.41□□□□□ -0.26
USHBP1-201ENST00000252597 GOLGA6BA6NDN3 693 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 GUCY2FP51841 1108 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 WHAMMP3Q1A5X7 153 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 SRBD1Q8N5C6 995 aaKnown RBP13.4□□□□□ -0.26
USHBP1-201ENST00000252597 SHISA4Q96DD7 197 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.4□□□□□ -0.26
USHBP1-201ENST00000252597 TBC1D7Q9P0N9 293 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 SAP30BPQ9UHR5 308 aaKnown RBP13.4□□□□□ -0.26
USHBP1-201ENST00000252597 C5P01031 1676 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 TCRBV5S4A2TA0A5A2 114 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 CSF1RP07333 972 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 MAP9Q49MG5 647 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 CACNA2D4Q7Z3S7 1137 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 TMC4Q7Z404 712 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 HDAC7Q8WUI4 952 aa13.4□□□□□ -0.26
USHBP1-201ENST00000252597 MOCS3O95396 460 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 MYBL2P10244 700 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 SPAG1Q07617 926 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 RNF187Q5TA31 235 aaPredicted RBP13.39□□□□□ -0.27
USHBP1-201ENST00000252597 KAT14Q9H8E8 782 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 CYLC1P35663 651 aaPredicted RBP13.39□□□□□ -0.27
USHBP1-201ENST00000252597 FAM76AQ8TAV0 307 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 BCAS4Q8TDM0 211 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 FERMT2Q96AC1 680 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 DYNLL2Q96FJ2 89 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 LRRC41Q15345 812 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 PKN1Q16512 942 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 CAVIN4Q5BKX8 364 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 RRP36Q96EU6 259 aaKnown RBP13.39□□□□□ -0.27
USHBP1-201ENST00000252597 C8orf37Q96NL8 207 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 TUBGCP2Q9BSJ2 902 aa13.39□□□□□ -0.27
USHBP1-201ENST00000252597 RNF26Q9BY78 433 aaPredicted RBP13.39□□□□□ -0.27
USHBP1-201ENST00000252597 ARHGAP25P42331 645 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 LRRC31Q6UY01 552 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 FBXL16Q8N461 479 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 SH2D3CQ8N5H7 860 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 FAM71BQ8TC56 605 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 CCDC47Q96A33 483 aaKnown RBP13.38□□□□□ -0.27
USHBP1-201ENST00000252597 NGLY1Q96IV0 654 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 EXOC1Q9NV70 894 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 RCCD1A6NED2 376 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 FCER1AP12319 257 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 HPDP32754 393 aaPredicted RBP13.38□□□□□ -0.27
USHBP1-201ENST00000252597 ATP6V1AP38606 617 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 TECP42680 631 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 TXKP42681 527 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 MNAT1P51948 309 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 GNGT1P63211 74 aa13.38□□□□□ -0.27
USHBP1-201ENST00000252597 HLTFQ14527 1009 aaKnown RBP eCLIP13.38□□□□□ -0.27
USHBP1-201ENST00000252597 RRAGAQ7L523 313 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms