RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 CCDC178Q5BJE1 867 aa14.96□□□□□ -0.01
HIF3A-201ENST00000244302 MOB2Q70IA6 237 aa14.96□□□□□ -0.01
HIF3A-201ENST00000244302 HOMER1Q86YM7 354 aa14.96□□□□□ -0.01
HIF3A-201ENST00000244302 RRAGDQ9NQL2 400 aaPredicted RBP14.96□□□□□ -0.01
HIF3A-201ENST00000244302 RBM28Q9NW13 759 aaKnown RBP14.96□□□□□ -0.01
HIF3A-201ENST00000244302 F5H6K3 240 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 PRPF3O43395 683 aaKnown RBP14.95□□□□□ -0.02
HIF3A-201ENST00000244302 GADD45BO75293 160 aaPredicted RBP14.95□□□□□ -0.02
HIF3A-201ENST00000244302 TAL1P17542 331 aaPredicted RBP14.95□□□□□ -0.02
HIF3A-201ENST00000244302 KLRC3Q07444 240 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 MKL1Q969V6 931 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 CABP5Q9NP86 173 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 GREB1LQ9C091 1923 aaPredicted RBP14.95□□□□□ -0.02
HIF3A-201ENST00000244302 BTBD18B2RXH4 712 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 FIBPO43427 364 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 SNHG28P0DPA3 235 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 MMP14P50281 582 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 NR5A1Q13285 461 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 SLFN13Q68D06 897 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 USP48Q86UV5 1035 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 TRIM22Q8IYM9 498 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 RNF26Q9BY78 433 aaPredicted RBP14.95□□□□□ -0.02
HIF3A-201ENST00000244302 NYAP2Q9P242 653 aa14.95□□□□□ -0.02
HIF3A-201ENST00000244302 SSC5DA1L4H1 1573 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 FAM205CA6NFA0 338 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 DEXIO95424 95 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 NDUFB10O96000 172 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 KIF5BP33176 963 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 CLCN1P35523 988 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 EARS2Q5JPH6 523 aaKnown RBP14.94□□□□□ -0.02
HIF3A-201ENST00000244302 L3MBTL3Q96JM7 780 aaPredicted RBP14.94□□□□□ -0.02
HIF3A-201ENST00000244302 PIGSQ96S52 555 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 TAF1DQ9H5J8 278 aaPredicted RBP14.94□□□□□ -0.02
HIF3A-201ENST00000244302 LMBRD1Q9NUN5 540 aa14.94□□□□□ -0.02
HIF3A-201ENST00000244302 KIF23Q02241 960 aaPredicted RBP14.93□□□□□ -0.02
HIF3A-201ENST00000244302 ZNF543Q08ER8 600 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 CCDC96Q2M329 555 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 ZNF526Q8TF50 670 aaPredicted RBP14.93□□□□□ -0.02
HIF3A-201ENST00000244302 STK36Q9NRP7 1315 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 USP17L10C9JJH3 530 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 NT5C2P49902 561 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 AKAP17AQ02040 695 aaKnown RBP14.93□□□□□ -0.02
HIF3A-201ENST00000244302 PPP2R5BQ15173 497 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 NPY5RQ15761 445 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 APOBEC3FQ8IUX4 373 aaKnown RBP14.93□□□□□ -0.02
HIF3A-201ENST00000244302 WRNIP1Q96S55 665 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 PANK2Q9BZ23 570 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 MYH4Q9Y623 1939 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 PCNTO95613 3336 aa14.93□□□□□ -0.02
HIF3A-201ENST00000244302 SLC1A4P43007 532 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 WWC2Q6AWC2 1192 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 SAMD1Q6SPF0 538 aaPredicted RBP14.92□□□□□ -0.02
HIF3A-201ENST00000244302 KRT26Q7Z3Y9 468 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 ADGRF4Q8IZF3 695 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 MAP3K14Q99558 947 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 PPP1R11O60927 126 aaPredicted RBP14.92□□□□□ -0.02
HIF3A-201ENST00000244302 USP2O75604 605 aaPredicted RBP14.92□□□□□ -0.02
HIF3A-201ENST00000244302 SCG2P13521 617 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 PFKFB3Q16875 520 aaPredicted RBP14.92□□□□□ -0.02
HIF3A-201ENST00000244302 CNKSR2Q8WXI2 1034 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 DCPSQ96C86 337 aaKnown RBP14.92□□□□□ -0.02
HIF3A-201ENST00000244302 USP28Q96RU2 1077 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 JMJD4Q9H9V9 463 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 RRAGCQ9HB90 399 aa14.92□□□□□ -0.02
HIF3A-201ENST00000244302 MAP1SQ66K74 1059 aaPredicted RBP14.91□□□□□ -0.02
HIF3A-201ENST00000244302 DIS3L2Q8IYB7 885 aaKnown RBP14.91□□□□□ -0.02
HIF3A-201ENST00000244302 RASGRP4Q8TDF6 673 aa14.91□□□□□ -0.02
HIF3A-201ENST00000244302 COA7Q96BR5 231 aa14.91□□□□□ -0.02
HIF3A-201ENST00000244302 ZNF341Q9BYN7 854 aa14.91□□□□□ -0.02
HIF3A-201ENST00000244302 TRAF5O00463 557 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 WNT7AO00755 349 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 MMP1P03956 469 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 HEATR3Q7Z4Q2 680 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 SULF1Q8IWU6 871 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 KLRG1Q96E93 195 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 TMX2Q9Y320 296 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 KIF3AQ9Y496 699 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 TMEM232C9JQI7 657 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 KLHL40Q2TBA0 621 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 FAM83BQ5T0W9 1011 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 GPT2Q8TD30 523 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 PHF20Q9BVI0 1012 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 RIOX1Q9H6W3 641 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 FBXO28Q9NVF7 368 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 CLIC4Q9Y696 253 aa14.9□□□□□ -0.02
HIF3A-201ENST00000244302 ASNSP08243 561 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 ATP2B1P20020 1258 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 SPZ1Q9BXG8 430 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 ZNF112Q9UJU3 913 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 CLEC11AQ9Y240 323 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 MYH6P13533 1939 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 CTNND1O60716 968 aaKnown RBP14.89□□□□□ -0.03
HIF3A-201ENST00000244302 GNAQP50148 359 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 SPP2Q13103 211 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 TRIM29Q14134 588 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 ASPRV1Q53RT3 343 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 USP50Q70EL3 339 aaPredicted RBP14.89□□□□□ -0.03
HIF3A-201ENST00000244302 NMRK2Q9NPI5 230 aa14.89□□□□□ -0.03
HIF3A-201ENST00000244302 STXBP3O00186 592 aa14.88□□□□□ -0.03
HIF3A-201ENST00000244302 TOB1P50616 345 aaPredicted RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms