RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 EMBQ6PCB8 327 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 HOOK2Q96ED9 719 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 SLC26A6Q9BXS9 759 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 SAMSN1Q9NSI8 373 aaKnown RBP13.68□□□□□ -0.22
LIG1-207ENST00000594759 MADDQ8WXG6 1647 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 IFIT1P09914 478 aaKnown RBP13.68□□□□□ -0.22
LIG1-207ENST00000594759 CFAP221Q4G0U5 840 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 ARMC9Q7Z3E5 817 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 SNRKQ9NRH2 765 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 GOLGA8AA7E2F4 631 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 PRC1O43663 620 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 SLC8A3P57103 927 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 ZNF365Q70YC5 407 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 SH2D3CQ8N5H7 860 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 HVCN1Q96D96 273 aa13.68□□□□□ -0.22
LIG1-207ENST00000594759 GUCY2DQ02846 1103 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 KLHDC4Q8TBB5 520 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 KAT2BQ92831 832 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 CLIC6Q96NY7 704 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 CCDC160A6NGH7 325 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 FAM133BQ5BKY9 247 aaKnown RBP13.67□□□□□ -0.22
LIG1-207ENST00000594759 CTNND2Q9UQB3 1225 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 MARCH6O60337 910 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 PDHBP11177 359 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 LSP1P33241 339 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 GRIPAP1Q4V328 841 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 ZNF589Q86UQ0 364 aaPredicted RBP13.67□□□□□ -0.22
LIG1-207ENST00000594759 NCOA7Q8NI08 942 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 MTMR7Q9Y216 660 aa13.67□□□□□ -0.22
LIG1-207ENST00000594759 GMNCA6NCL1 334 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 PRPHP41219 470 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 SEC24CP53992 1094 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 UBE4AQ14139 1066 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 SEPT7Q16181 437 aaKnown RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 MUM1Q2TAK8 710 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 KSR2Q6VAB6 950 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 KLHL29Q96CT2 875 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 FAM210AQ96ND0 272 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 POLR3EQ9NVU0 708 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 SERTAD1Q9UHV2 236 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 CREB3O43889 395 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 KLHL7Q8IXQ5 586 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 ENOX1Q8TC92 643 aaKnown RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 EAF2Q96CJ1 260 aaPredicted RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 EHD4Q9H223 541 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 CHCHD3Q9NX63 227 aaKnown RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 GRM8O00222 908 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 TCP1P17987 556 aaKnown RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 SPATA1Q5VX52 437 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 NAA35Q5VZE5 725 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 VCPKMTQ9H867 229 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 HDAC6Q9UBN7 1215 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 HMGB1P1B2RPK0 211 aaPredicted RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 DIAPH2O60879 1101 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 KCNB1Q14721 858 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 SETDB1Q15047 1291 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 CCNI2Q6ZMN8 369 aaPredicted RBP13.66□□□□□ -0.22
LIG1-207ENST00000594759 ACSBG1Q96GR2 724 aa13.66□□□□□ -0.22
LIG1-207ENST00000594759 SETD1BQ9UPS6 1966 aaKnown RBP13.65□□□□□ -0.22
LIG1-207ENST00000594759 PLEKHG1Q9ULL1 1385 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 ADCY2Q08462 1091 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 FAM114A1Q8IWE2 563 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 TC2NQ8N9U0 490 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 ATP6V0A4Q9HBG4 840 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 EPB41L5Q9HCM4 733 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 ABCA6Q8N139 1617 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 PPRC1Q5VV67 1664 aaKnown RBP13.65□□□□□ -0.22
LIG1-207ENST00000594759 TAF5LO75529 589 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 IDH1O75874 414 aaKnown RBP13.65□□□□□ -0.22
LIG1-207ENST00000594759 PRPF4BQ13523 1007 aaKnown RBP13.65□□□□□ -0.22
LIG1-207ENST00000594759 RCSD1Q6JBY9 416 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 WDR93Q6P2C0 686 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 VSIG1Q86XK7 387 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 TARSL2A2RTX5 802 aaKnown RBP13.65□□□□□ -0.22
LIG1-207ENST00000594759 FSBPO95073 299 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 TBC1D8BQ0IIM8 1120 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 INTS8Q75QN2 995 aaKnown RBP13.65□□□□□ -0.22
LIG1-207ENST00000594759 RMND1Q9NWS8 449 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 MCM8Q9UJA3 840 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 HYOU1Q9Y4L1 999 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 SLC12A7Q9Y666 1083 aa13.65□□□□□ -0.22
LIG1-207ENST00000594759 MFAP3LO75121 409 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 SLC39A14Q15043 492 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 PLCB4Q15147 1175 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 METTL24Q5JXM2 366 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 LMBR1LQ6UX01 489 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 STMN4Q9H169 189 aaPredicted RBP13.64□□□□□ -0.23
LIG1-207ENST00000594759 VCX3BQ9H321 246 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 MMRN2Q9H8L6 949 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 VCX3AQ9NNX9 186 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 TRMT112Q9UI30 125 aaKnown RBP13.64□□□□□ -0.23
LIG1-207ENST00000594759 MAPK8IP1Q9UQF2 711 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 RASSF10A6NK89 507 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 TTC36A6NLP5 189 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 CTNND1O60716 968 aaKnown RBP13.64□□□□□ -0.23
LIG1-207ENST00000594759 DDR1Q08345 913 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 SH2D4BQ5SQS7 431 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 LMBR1Q8WVP7 490 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 NGLY1Q96IV0 654 aa13.64□□□□□ -0.23
LIG1-207ENST00000594759 MMS19Q96T76 1030 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms