RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NMT2O60551 498 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 CD2BP2O95400 341 aaKnown RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 PTPRAP18433 802 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 SMARCA1P28370 1054 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 METAP2P50579 478 aaKnown RBP eCLIP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 TTLL12Q14166 644 aaPredicted RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 ASPRV1Q53RT3 343 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 GPATCH4Q5T3I0 446 aaKnown RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 ERO1BQ86YB8 467 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 GMCL1Q96IK5 515 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 RBM27Q9P2N5 1060 aaKnown RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 CLIP2Q9UDT6 1046 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 DAXXQ9UER7 740 aaPredicted RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 LOC285556D6RIA3 1793 aa18.69■□□□□ 0.58
PRPF40A-212ENST00000545856 SPDYE5A6NIY4 337 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 PDIA4P13667 645 aaKnown RBP18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 VGLL4Q14135 290 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 ZNF280CQ8ND82 737 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 BRPF3Q9ULD4 1205 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 SNCAIPQ9Y6H5 919 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 GOLGA8AA7E2F4 631 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 CELF2O95319 508 aaKnown RBP18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 SLURP2P0DP57 97 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 GRM4Q14833 912 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 ME3Q16798 604 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 RTN1Q16799 776 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 FANCBQ8NB91 859 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 RGS22Q8NE09 1264 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 C12orf42Q96LP6 360 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 VCPKMTQ9H867 229 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 KIF3AQ9Y496 699 aa18.68■□□□□ 0.58
PRPF40A-212ENST00000545856 USP17L10C9JJH3 530 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 TRAF5O00463 557 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 CXCL11O14625 94 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 JAG1P78504 1218 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 PPIL2Q13356 520 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 MICU3Q86XE3 530 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 SIAH1Q8IUQ4 282 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 ZNF784Q8NCA9 323 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 ZKSCAN4Q969J2 545 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 HHIPL1Q96JK4 782 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 GPHNQ9NQX3 736 aaPredicted RBP18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 HPS5Q9UPZ3 1129 aa18.67■□□□□ 0.58
PRPF40A-212ENST00000545856 CPLX1O14810 134 aa18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 PLA2G6O60733 806 aa18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 PARP1P09874 1014 aaKnown RBP18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 HMGN5P82970 282 aaKnown RBP18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 SH3D19Q5HYK7 790 aa18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 IPO9Q96P70 1041 aaKnown RBP18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 FEZ1Q99689 392 aa18.66■□□□□ 0.58
PRPF40A-212ENST00000545856 STK36Q9NRP7 1315 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 F5H6K3 240 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 WDR46O15213 610 aaKnown RBP18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 PDHBP11177 359 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 BACE1P56817 501 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 ATP2B2Q01814 1243 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 KLRC3Q07444 240 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 USP17L2Q6R6M4 530 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 FAM177A1Q8N128 213 aaPredicted RBP18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 SENP2Q9HC62 589 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 KCNH4Q9UQ05 1017 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 AFG3L2Q9Y4W6 797 aa18.65■□□□□ 0.58
PRPF40A-212ENST00000545856 PALM3A6NDB9 673 aaPredicted RBP18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 HSP90AA1P07900 732 aaKnown RBP18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 ZBTB48P10074 688 aaPredicted RBP18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 IFNAR1P17181 557 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 ZNF543Q08ER8 600 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 SCRN1Q12765 414 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 SLFN13Q68D06 897 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 NUP133Q8WUM0 1156 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 CWC22Q9HCG8 908 aaKnown RBP18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 NAP1L2Q9ULW6 460 aaPredicted RBP18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 ZHX2Q9Y6X8 837 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 PARP14Q460N5 1801 aa18.64■□□□□ 0.57
PRPF40A-212ENST00000545856 A0A1W2PRG0 241 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 NDUFB10O96000 172 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 SLC1A4P43007 532 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 PRKG1Q13976 671 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 TMTC3Q6ZXV5 915 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 LRRC47Q8N1G4 583 aaKnown RBP18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 PROCA1Q8NCQ7 364 aaPredicted RBP18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 SLC10A4Q96EP9 437 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 SPZ1Q9BXG8 430 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 RNF26Q9BY78 433 aaPredicted RBP18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 ZNF408Q9H9D4 720 aa18.63■□□□□ 0.57
PRPF40A-212ENST00000545856 LARGE1O95461 756 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 FDX1P10109 184 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 BMP3P12645 472 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 SHROOM1Q2M3G4 852 aaPredicted RBP18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 CST9Q5W186 159 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 NOL8Q76FK4 1167 aaKnown RBP18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 CLEC10AQ8IUN9 316 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 TRIM22Q8IYM9 498 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 SMARCC2Q8TAQ2 1214 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 ACER1Q8TDN7 264 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 MAD2L2Q9UI95 211 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 PNMA2Q9UL42 364 aa18.62■□□□□ 0.57
PRPF40A-212ENST00000545856 MYPNQ86TC9 1320 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms