RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 P3H4Q92791 437 aa16.42■□□□□ 0.22
CHD4-201ENST00000357008 NT5C3AQ9H0P0 336 aa16.42■□□□□ 0.22
CHD4-201ENST00000357008 CLGNO14967 610 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 ZAP70P43403 619 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 PPARDQ03181 441 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 STRN3Q13033 797 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 TBC1D7Q9P0N9 293 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 PALD1Q9ULE6 856 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 NUP153P49790 1475 aaKnown RBP16.41■□□□□ 0.22
CHD4-201ENST00000357008 CRCPO75575 148 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 GPIHBP1Q8IV16 184 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 MYCT1Q8N699 235 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 KLHL14Q9P2G3 628 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 H7C1D1 291 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 ERCC3P19447 782 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 CDC25BP30305 580 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 RAB3IPQ96QF0 476 aaPredicted RBP16.41■□□□□ 0.22
CHD4-201ENST00000357008 TROVE2P10155 538 aaKnown RBP eCLIP16.41■□□□□ 0.22
CHD4-201ENST00000357008 APBA1Q02410 837 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 PTH1RQ03431 593 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 SPATA5Q8NB90 893 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 FANCLQ9NW38 375 aa16.41■□□□□ 0.22
CHD4-201ENST00000357008 GCNT3O95395 438 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 MRPL44Q9H9J2 332 aaKnown RBP16.4■□□□□ 0.22
CHD4-201ENST00000357008 USTQ9Y2C2 406 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 SHANK2Q9UPX8 1470 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 TRAPPC8Q9Y2L5 1435 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 RIMBP2O15034 1052 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 PYCARDQ9ULZ3 195 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 PCDHA7Q9UN72 937 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 STAT1P42224 750 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 TDRD7Q8NHU6 1098 aaKnown RBP16.4■□□□□ 0.22
CHD4-201ENST00000357008 ZNF518AQ6AHZ1 1483 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 ZNF853P0CG23 659 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 SPATA1Q5VX52 437 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 REXO1Q8N1G1 1221 aaKnown RBP16.4■□□□□ 0.22
CHD4-201ENST00000357008 ANKRD42Q8N9B4 389 aa16.4■□□□□ 0.22
CHD4-201ENST00000357008 LSM14BQ9BX40 385 aaKnown RBP16.4■□□□□ 0.22
CHD4-201ENST00000357008 KRIT1O00522 736 aa16.39■□□□□ 0.22
CHD4-201ENST00000357008 KCNK3O14649 394 aa16.39■□□□□ 0.22
CHD4-201ENST00000357008 HIP1RO75146 1068 aa16.39■□□□□ 0.22
CHD4-201ENST00000357008 ZNF654Q8IZM8 581 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 CABLES1Q8TDN4 633 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 VPS37BQ9H9H4 285 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 BCAP29Q9UHQ4 241 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 TBC1D8O95759 1140 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 SLC8A1P32418 973 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 MICAL1Q8TDZ2 1067 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 STK38LQ9Y2H1 464 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 MGARPQ8TDB4 240 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 TACC3Q9Y6A5 838 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 PHLDB3Q6NSJ2 640 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 AATFQ9NY61 560 aaKnown RBP eCLIP16.39■□□□□ 0.21
CHD4-201ENST00000357008 MYO1AQ9UBC5 1043 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 TXNDC9O14530 226 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 EIF6P56537 245 aaKnown RBP16.39■□□□□ 0.21
CHD4-201ENST00000357008 SF3A3Q12874 501 aaKnown RBP eCLIP16.39■□□□□ 0.214e-6■■■■□ 22.2
CHD4-201ENST00000357008 U2AF1L4Q8WU68 220 aaKnown RBP16.39■□□□□ 0.21
CHD4-201ENST00000357008 ARHGEF10LQ9HCE6 1279 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 USH1CQ9Y6N9 552 aa16.39■□□□□ 0.21
CHD4-201ENST00000357008 MROH5Q6ZUA9 1318 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 ATP1A2P50993 1020 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 LGR6Q9HBX8 967 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 FAM135BQ49AJ0 1406 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.38■□□□□ 0.21
CHD4-201ENST00000357008 A0A0D9SFI3 127 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 A0A1W2PQ27 194 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 A0A1W2PQ64 194 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 A0A1W2PQD8 194 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 TBC1D31Q96DN5 1066 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 PLEKHA4Q9H4M7 779 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 CDC23Q9UJX2 597 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 VGLL3A8MV65 326 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 PSMD6Q15008 389 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 NCKAP5LQ9HCH0 1330 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 XRCC5P13010 732 aaKnown RBP16.38■□□□□ 0.21
CHD4-201ENST00000357008 MYOCDQ8IZQ8 938 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 EPSTI1Q96J88 318 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 KDM3AQ9Y4C1 1321 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 LIG3P49916 1009 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 SRGAP1Q7Z6B7 1085 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 PDE11AQ9HCR9 933 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 FAM114A2Q9NRY5 505 aa16.38■□□□□ 0.21
CHD4-201ENST00000357008 EPN1Q9Y6I3 576 aaPredicted RBP16.38■□□□□ 0.21
CHD4-201ENST00000357008 PZPP20742 1482 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 hCG_1642624A0A1W2PR95 340 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 DAPK3O43293 454 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 RAD51AP2Q09MP3 1159 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 ARHGAP44Q17R89 818 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 CCDC89Q8N998 374 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 RBM17Q96I25 401 aaKnown RBP16.37■□□□□ 0.21
CHD4-201ENST00000357008 PPP1R13BQ96KQ4 1090 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 TACO1Q9BSH4 297 aaKnown RBP16.37■□□□□ 0.21
CHD4-201ENST00000357008 USP44Q9H0E7 712 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 SLC52A2Q9HAB3 445 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 ZMYM6O95789 1325 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 GTPBP6O43824 516 aaPredicted RBP16.37■□□□□ 0.21
CHD4-201ENST00000357008 NDUFA8P51970 172 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 SLC1A4P43007 532 aa16.37■□□□□ 0.21
CHD4-201ENST00000357008 DMTNQ08495 405 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 220 ms