RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 IQCA1Q86XH1 822 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 RASAL3Q86YV0 1011 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 SIAH1Q8IUQ4 282 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 ZNF280CQ8ND82 737 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 CCDC102AQ96A19 550 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 CEP95Q96GE4 821 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 ZKSCAN3Q9BRR0 538 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 WDR18Q9BV38 432 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 AS3MTQ9HBK9 375 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 MTMR4Q9NYA4 1195 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 AFG3L2Q9Y4W6 797 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 OTOFQ9HC10 1997 aa14.43□□□□□ -0.1
SHMT2-209ENST00000553949 IRF6O14896 467 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 SLC10A3P09131 477 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 EEF2P13639 858 aaKnown RBP14.42□□□□□ -0.1
SHMT2-209ENST00000553949 PSMA5P28066 241 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 MCM5P33992 734 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 RBM25P49756 843 aaKnown RBP14.42□□□□□ -0.1
SHMT2-209ENST00000553949 ANTXR2P58335 489 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 MKRN3Q13064 507 aaKnown RBP14.42□□□□□ -0.1
SHMT2-209ENST00000553949 SPP2Q13103 211 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 DEFB115Q30KQ5 88 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 SPRYD7Q5W111 196 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 PAXIP1Q6ZW49 1069 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-209ENST00000553949 DHX32Q7L7V1 743 aaKnown RBP14.42□□□□□ -0.1
SHMT2-209ENST00000553949 CHST3Q7LGC8 479 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 ACER1Q8TDN7 264 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 IL17RAQ96F46 866 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 ZSCAN10Q96SZ4 725 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-209ENST00000553949 UBAC1Q9BSL1 405 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 DOCK1Q14185 1865 aa14.42□□□□□ -0.1
SHMT2-209ENST00000553949 A0A1W2PRG0 241 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 TRIM75PA6NK02 468 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 FAM155AB1AL88 458 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-209ENST00000553949 PRC1O43663 620 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 TTLL1O95922 423 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 ZBTB48P10074 688 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-209ENST00000553949 CASTP20810 708 aaKnown RBP14.41□□□□□ -0.1
SHMT2-209ENST00000553949 ECE1P42892 770 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 NOVP48745 357 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 ATP2B2Q01814 1243 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 CCDC178Q5BJE1 867 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 PPP4R3BQ5MIZ7 849 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 CYP4F22Q6NT55 531 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 BLOC1S2Q6QNY1 142 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 TM6SF1Q9BZW5 370 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 ARHGEF10LQ9HCE6 1279 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 ZSWIM6Q9HCJ5 1215 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 NYAP2Q9P242 653 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 STX8Q9UNK0 236 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 TNKSO95271 1327 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 WDR19Q8NEZ3 1342 aa14.41□□□□□ -0.1
SHMT2-209ENST00000553949 CXCL11O14625 94 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 CPA1P15085 419 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 EXOSC10Q01780 885 aaKnown RBP14.4□□□□□ -0.1
SHMT2-209ENST00000553949 MTMR2Q13614 643 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 SART3Q15020 963 aaKnown RBP14.4□□□□□ -0.1
SHMT2-209ENST00000553949 RCSD1Q6JBY9 416 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 DGKHQ86XP1 1220 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 ENAHQ8N8S7 591 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-209ENST00000553949 ANKS1AQ92625 1134 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 CAPNS2Q96L46 248 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 TTC14Q96N46 770 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 TBC1D32Q96NH3 1257 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 FEZ1Q99689 392 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 CLIP2Q9UDT6 1046 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 KCNH4Q9UQ05 1017 aa14.4□□□□□ -0.1
SHMT2-209ENST00000553949 ERICH2A1L162 156 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 USP17L10C9JJH3 530 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 IFIT3O14879 490 aaKnown RBP14.39□□□□□ -0.11
SHMT2-209ENST00000553949 RPS6KB1P23443 525 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 BACE1P56817 501 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 GRM1Q13255 1194 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 SNAPC2Q13487 334 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 SEC23AQ15436 765 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 TMEM67Q5HYA8 995 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 RUFY3Q7L099 469 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 IGDCC4Q8TDY8 1250 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 MKL1Q969V6 931 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 TMEM87BQ96K49 555 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 TCEANC2Q96MN5 208 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 KIF2CQ99661 725 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 TMEM47Q9BQJ4 181 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 MTA3Q9BTC8 594 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 UPF3BQ9BZI7 483 aaKnown RBP14.39□□□□□ -0.11
SHMT2-209ENST00000553949 KIAA1683Q9H0B3 1180 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 SH2D4AQ9H788 454 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 TMX2Q9Y320 296 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 CYP46A1Q9Y6A2 500 aa14.39□□□□□ -0.11
SHMT2-209ENST00000553949 GREB1LQ9C091 1923 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-209ENST00000553949 A0A0G2JLL6 359 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 C19orf81C9J6K1 198 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 SH2B2O14492 632 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 TOP1P11387 765 aaKnown RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 GTF2A2P52657 109 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 USP14P54578 494 aa14.38□□□□□ -0.11
SHMT2-209ENST00000553949 IFIT1BQ5T764 474 aaKnown RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 PRRT2Q7Z6L0 340 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 LRRC47Q8N1G4 583 aaKnown RBP14.38□□□□□ -0.11
SHMT2-209ENST00000553949 MS4A4AQ96JQ5 239 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms