RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.2■□□□□ 0.98
SDC1-203ENST00000403076 ZBTB21Q9ULJ3 1066 aa21.2■□□□□ 0.98
SDC1-203ENST00000403076 CD2BP2O95400 341 aaKnown RBP21.19■□□□□ 0.98
SDC1-203ENST00000403076 ASNSP08243 561 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 LIFRP42702 1097 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 JAG1P78504 1218 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 SEC23AQ15436 765 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 ARMC9Q7Z3E5 817 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 DGKHQ86XP1 1220 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 CLEC10AQ8IUN9 316 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 FBXL16Q8N461 479 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 AGXT2Q9BYV1 514 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 MTMR4Q9NYA4 1195 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 LIMCH1Q9UPQ0 1083 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 IGKV6D-41A0A0C4DH26 115 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 MAP3K9P80192 1104 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 ICA1Q05084 483 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 BECN1Q14457 450 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 SYNE3Q6ZMZ3 975 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 ZKSCAN4Q969J2 545 aaPredicted RBP21.19■□□□□ 0.98
SDC1-203ENST00000403076 SNX21Q969T3 373 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 KAT14Q9H8E8 782 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 SENP2Q9HC62 589 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 PICK1Q9NRD5 415 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 GINM1Q9NU53 330 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 CLIP2Q9UDT6 1046 aa21.19■□□□□ 0.98
SDC1-203ENST00000403076 KLF18A0A0U1RQI7 1052 aa21.18■□□□□ 0.98
SDC1-203ENST00000403076 CELF2O95319 508 aaKnown RBP21.18■□□□□ 0.98
SDC1-203ENST00000403076 TTLL1O95922 423 aa21.18■□□□□ 0.98
SDC1-203ENST00000403076 SCYL3Q8IZE3 742 aa21.18■□□□□ 0.98
SDC1-203ENST00000403076 CSADQ9Y600 493 aa21.18■□□□□ 0.98
SDC1-203ENST00000403076 SLC12A7Q9Y666 1083 aa21.18■□□□□ 0.98
SDC1-203ENST00000403076 ITGBL1O95965 494 aaPredicted RBP21.17■□□□□ 0.98
SDC1-203ENST00000403076 GUCY1A2P33402 732 aa21.17■□□□□ 0.98
SDC1-203ENST00000403076 RCSD1Q6JBY9 416 aa21.17■□□□□ 0.98
SDC1-203ENST00000403076 SGMS1Q86VZ5 419 aa21.17■□□□□ 0.98
SDC1-203ENST00000403076 ZNF784Q8NCA9 323 aaPredicted RBP21.17■□□□□ 0.98
SDC1-203ENST00000403076 SMC1BQ8NDV3 1235 aa21.17■□□□□ 0.98
SDC1-203ENST00000403076 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.17■□□□□ 0.984e-9■■□□□ 12.3
SDC1-203ENST00000403076 ANKS1AQ92625 1134 aa21.17■□□□□ 0.98
SDC1-203ENST00000403076 TOP1P11387 765 aaKnown RBP21.16■□□□□ 0.98
SDC1-203ENST00000403076 EEF2P13639 858 aaKnown RBP21.16■□□□□ 0.98
SDC1-203ENST00000403076 MOB2Q70IA6 237 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 CATIPQ7Z7H3 387 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 C2orf69Q8N8R5 385 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 ZSCAN31Q96LW9 406 aaPredicted RBP21.16■□□□□ 0.98
SDC1-203ENST00000403076 TMEM47Q9BQJ4 181 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 GBA2Q9HCG7 927 aaPredicted RBP21.16■□□□□ 0.98
SDC1-203ENST00000403076 NYAP2Q9P242 653 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.16■□□□□ 0.98
SDC1-203ENST00000403076 BRPF3Q9ULD4 1205 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 TPCN1Q9ULQ1 816 aa21.16■□□□□ 0.98
SDC1-203ENST00000403076 STK3Q13188 491 aa21.15■□□□□ 0.98
SDC1-203ENST00000403076 ANKRD13AQ8IZ07 590 aa21.15■□□□□ 0.98
SDC1-203ENST00000403076 TBC1D2Q9BYX2 928 aa21.15■□□□□ 0.98
SDC1-203ENST00000403076 ARHGEF10LQ9HCE6 1279 aa21.15■□□□□ 0.98
SDC1-203ENST00000403076 MTMR7Q9Y216 660 aa21.15■□□□□ 0.98
SDC1-203ENST00000403076 GOLGA8BA8MQT2 603 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 USP17L5A8MUK1 530 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 UBE2Q2LH0YL09 131 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 K7ELQ4 463 aaPredicted RBP21.14■□□□□ 0.98
SDC1-203ENST00000403076 TOMM70O94826 608 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 NOL9Q5SY16 702 aaKnown RBP21.14■□□□□ 0.98
SDC1-203ENST00000403076 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.14■□□□□ 0.98
SDC1-203ENST00000403076 CCDC84Q86UT8 332 aaPredicted RBP21.14■□□□□ 0.98
SDC1-203ENST00000403076 RAB11FIP4Q86YS3 637 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 ZNF654Q8IZM8 581 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 PNMA1Q8ND90 353 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 NUP133Q8WUM0 1156 aa21.14■□□□□ 0.98
SDC1-203ENST00000403076 ZNF274Q96GC6 653 aaPredicted RBP21.14■□□□□ 0.98
SDC1-203ENST00000403076 ZBTB43O43298 467 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 RAD21O60216 631 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 FKBP1BP68106 108 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 VGLL4Q14135 290 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 MAP3K11Q16584 847 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 APOA5Q6Q788 366 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 MICU3Q86XE3 530 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 LRRC47Q8N1G4 583 aaKnown RBP21.14■□□□□ 0.97
SDC1-203ENST00000403076 RBM46Q8TBY0 533 aaKnown RBP21.14■□□□□ 0.97
SDC1-203ENST00000403076 MYL10Q9BUA6 226 aa21.14■□□□□ 0.97
SDC1-203ENST00000403076 SLKQ9H2G2 1235 aaPredicted RBP21.14■□□□□ 0.97
SDC1-203ENST00000403076 SH2B1Q9NRF2 756 aaPredicted RBP21.14■□□□□ 0.97
SDC1-203ENST00000403076 DAXXQ9UER7 740 aaPredicted RBP21.14■□□□□ 0.97
SDC1-203ENST00000403076 PTPRAP18433 802 aa21.13■□□□□ 0.97
SDC1-203ENST00000403076 PDIA3P30101 505 aaKnown RBP21.13■□□□□ 0.97
SDC1-203ENST00000403076 EVCP57679 992 aa21.13■□□□□ 0.97
SDC1-203ENST00000403076 ME3Q16798 604 aa21.13■□□□□ 0.97
SDC1-203ENST00000403076 TMX3Q96JJ7 454 aa21.13■□□□□ 0.97
SDC1-203ENST00000403076 SH2D4AQ9H788 454 aa21.13■□□□□ 0.97
SDC1-203ENST00000403076 AS3MTQ9HBK9 375 aa21.13■□□□□ 0.97
SDC1-203ENST00000403076 GREB1LQ9C091 1923 aaPredicted RBP21.12■□□□□ 0.97
SDC1-203ENST00000403076 NOVP48745 357 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 SIAH1Q8IUQ4 282 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 MKL1Q969V6 931 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 CHMP4CQ96CF2 233 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 FEZ1Q99689 392 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 ELP3Q9H9T3 547 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 ZHX2Q9Y6X8 837 aa21.12■□□□□ 0.97
SDC1-203ENST00000403076 GOLGA8AA7E2F4 631 aa21.11■□□□□ 0.97
SDC1-203ENST00000403076 DDAH1O94760 285 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms