RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 PALM2Q8IXS6 379 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 CCDC89Q8N998 374 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 KRT12Q99456 494 aa13.09□□□□□ -0.31
SYNPO-202ENST00000394243 RNF8O76064 485 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 PKP1Q13835 747 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 TERF2Q15554 542 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 NBPF14Q5TI25 921 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 FCHSD1Q86WN1 690 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 SCYL3Q8IZE3 742 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 CDC23Q9UJX2 597 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 ANKRD65E5RJM6 399 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 FNBP1Q96RU3 617 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 HELLSQ9NRZ9 838 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 APOEP02649 317 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 CLCN6P51797 869 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 CCDC84Q86UT8 332 aaPredicted RBP13.08□□□□□ -0.32
SYNPO-202ENST00000394243 DIS3L2Q8IYB7 885 aaKnown RBP13.08□□□□□ -0.32
SYNPO-202ENST00000394243 LRRC8CQ8TDW0 803 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 TBC1D7Q9P0N9 293 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 TTC38Q5R3I4 469 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 MMS22LQ6ZRQ5 1243 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 ADAT2Q7Z6V5 191 aaKnown RBP13.08□□□□□ -0.32
SYNPO-202ENST00000394243 KLHL29Q96CT2 875 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 TRAF1Q13077 416 aa13.08□□□□□ -0.32
SYNPO-202ENST00000394243 THAP12O43422 761 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 DNAJC8O75937 253 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-202ENST00000394243 CAPN12Q6ZSI9 719 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 TCP1P17987 556 aaKnown RBP13.07□□□□□ -0.32
SYNPO-202ENST00000394243 THEMISQ8N1K5 641 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-202ENST00000394243 SERTAD1Q9UHV2 236 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 TROQ12816 1431 aaPredicted RBP13.07□□□□□ -0.32
SYNPO-202ENST00000394243 ADGRF5Q8IZF2 1346 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 KCNJ18B7U540 433 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 KCNJ12Q14500 433 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 AFG3L2Q9Y4W6 797 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 DYMQ7RTS9 669 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 CCDC169A6NNP5 214 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 PICALMQ13492 652 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 CCDC152Q4G0S7 254 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 FAM227BQ96M60 508 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 AMOTL2Q9Y2J4 779 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 STK10O94804 968 aaKnown RBP13.07□□□□□ -0.32
SYNPO-202ENST00000394243 SLC35F6Q8N357 371 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 MAIP1Q8WWC4 291 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 PHKBQ93100 1093 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 SAAL1Q96ER3 474 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 HAUS7Q99871 368 aa13.07□□□□□ -0.32
SYNPO-202ENST00000394243 PARD3Q8TEW0 1356 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 EVI5O60447 810 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 ADCY8P40145 1251 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 RPS6KA2Q15349 733 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 HAUS1Q96CS2 278 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 MCM9Q9NXL9 1143 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 SGSM2O43147 1006 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 TXKP42681 527 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 ADALQ6DHV7 355 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 HIBCHQ6NVY1 386 aaPredicted RBP13.06□□□□□ -0.32
SYNPO-202ENST00000394243 TRIM6Q9C030 488 aaPredicted RBP13.06□□□□□ -0.32
SYNPO-202ENST00000394243 FANCLQ9NW38 375 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 FAM135AQ9P2D6 1515 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 TMEM87AQ8NBN3 555 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 U2AF1L4Q8WU68 220 aaKnown RBP13.06□□□□□ -0.32
SYNPO-202ENST00000394243 NLRP7Q8WX94 980 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 HAUS4Q9H6D7 363 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 ACTR5Q9H9F9 607 aaPredicted RBP13.06□□□□□ -0.32
SYNPO-202ENST00000394243 PHBP35232 272 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 LSM14BQ9BX40 385 aaKnown RBP13.06□□□□□ -0.32
SYNPO-202ENST00000394243 ENC1O14682 589 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 ABCB4P21439 1286 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 DCUN1D2Q6PH85 259 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 CHAMP1Q96JM3 812 aa13.06□□□□□ -0.32
SYNPO-202ENST00000394243 TRPA1O75762 1119 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 PFKFB1P16118 471 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 KRT24Q2M2I5 525 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 CWF19L2Q2TBE0 894 aaKnown RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 FBXO18Q8NFZ0 1043 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 YY1AP1Q9H869 796 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 ANGEL1Q9UNK9 670 aaKnown RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 V9GY48 417 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 INPP1P49441 399 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 GYS2P54840 703 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 RCN2Q14257 317 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 PARD6BQ9BYG5 372 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 MORC3Q14149 939 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 ME3Q16798 604 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 DAPK3O43293 454 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 HARSP12081 509 aaKnown RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 SKIP12755 728 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 CDC25BP30305 580 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 ESRRGP62508 458 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 TMEM87BQ96K49 555 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 ANLNQ9NQW6 1124 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 WASLO00401 505 aaPredicted RBP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 MAP3K7O43318 606 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 BIRC2Q13490 618 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 FBXO38Q6PIJ6 1188 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 NELFCDQ8IXH7 590 aa13.05□□□□□ -0.32
SYNPO-202ENST00000394243 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.05□□□□□ -0.32
SYNPO-202ENST00000394243 TRIM35Q9UPQ4 493 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms