RNA–Protein interactions for RNA: ENSMUST00000193839.5

Pcdha1-202, Transcript of Protocadherin alpha 1, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Pcdha1, Length 4,925 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1-202ENSMUST00000193839 Lce1eQ9D139 143 aa4.38□□□□□ -1.71
Pcdha1-202ENSMUST00000193839 Lce1hQ9D6R3 140 aa4.38□□□□□ -1.71
Pcdha1-202ENSMUST00000193839 Gm11564A2A4L9 201 aa4.34□□□□□ -1.71
Pcdha1-202ENSMUST00000193839 Gm11563B1AQ90 168 aa4.34□□□□□ -1.71
Pcdha1-202ENSMUST00000193839 Gm11595B1AQA7 289 aa4.34□□□□□ -1.71
Pcdha1-202ENSMUST00000193839 Krtap4-8B1AQA8 209 aa4.34□□□□□ -1.71
Pcdha1-202ENSMUST00000193839 SspoQ8CG65 4998 aa4.31□□□□□ -1.72
Pcdha1-202ENSMUST00000193839 Krtap4-9B1AQA9 244 aa4.29□□□□□ -1.72
Pcdha1-202ENSMUST00000193839 Gm10024A0A0A0MQA4 119 aa4.28□□□□□ -1.72
Pcdha1-202ENSMUST00000193839 Sprr2fO70557 76 aa4.26□□□□□ -1.73
Pcdha1-202ENSMUST00000193839 Gm11938Q9D3H4 131 aa4.26□□□□□ -1.73
Pcdha1-202ENSMUST00000193839 Sprr2hO70559 108 aa4.25□□□□□ -1.73
Pcdha1-202ENSMUST00000193839 2300003K06RikA2A4M0 262 aa4.21□□□□□ -1.74
Pcdha1-202ENSMUST00000193839 Gm11562A0PK51 136 aa4.19□□□□□ -1.74
Pcdha1-202ENSMUST00000193839 Sprr2eO70556 76 aa4.18□□□□□ -1.74
Pcdha1-202ENSMUST00000193839 Krtap4-7Q9D732 168 aa4.16□□□□□ -1.74
Pcdha1-202ENSMUST00000193839 Krtap31-1Q9D644 177 aa4.16□□□□□ -1.74
Pcdha1-202ENSMUST00000193839 Krtap4-13Q9D7P3 165 aa4.14□□□□□ -1.75
Pcdha1-202ENSMUST00000193839 Syne2Q6ZWQ0 6874 aaKnown RBP4.09□□□□□ -1.75
Pcdha1-202ENSMUST00000193839 Syne1Q6ZWR6 8799 aa4.04□□□□□ -1.76
Pcdha1-202ENSMUST00000193839 Lce1kJ3QP15 125 aa4.04□□□□□ -1.76
Pcdha1-202ENSMUST00000193839 Fsip2A2ARZ3 6995 aa4.02□□□□□ -1.77
Pcdha1-202ENSMUST00000193839 A0A1Y7VLE6 161 aa3.98□□□□□ -1.77
Pcdha1-202ENSMUST00000193839 Krtap6-3A0A087WQL6 57 aa3.96□□□□□ -1.78
Pcdha1-202ENSMUST00000193839 Krtap31-2Q8CAY5 177 aa3.88□□□□□ -1.79
Pcdha1-202ENSMUST00000193839 Mt3P28184 68 aa3.87□□□□□ -1.79
Pcdha1-202ENSMUST00000193839 Gm11555B1AQ89 175 aa3.84□□□□□ -1.79
Pcdha1-202ENSMUST00000193839 Lce1a1Q9CQH5 143 aa3.8□□□□□ -1.8
Pcdha1-202ENSMUST00000193839 Muc16A0A140LJ72 8478 aa3.75□□□□□ -1.81
Pcdha1-202ENSMUST00000193839 Mt1P02802 61 aaKnown RBP3.73□□□□□ -1.81
Pcdha1-202ENSMUST00000193839 Krtap20-2E9Q0A8 60 aa3.68□□□□□ -1.82
Pcdha1-202ENSMUST00000193839 Krtap4-16Q91W93 202 aa3.65□□□□□ -1.83
Pcdha1-202ENSMUST00000193839 A030003K21RikA0A1Y7VIM3 128 aa3.61□□□□□ -1.83
Pcdha1-202ENSMUST00000193839 Gm11554B1AQB2 190 aa3.59□□□□□ -1.84
Pcdha1-202ENSMUST00000193839 ObscnA2AAJ9 8891 aaKnown RBP3.57□□□□□ -1.84
Pcdha1-202ENSMUST00000193839 Macf1Q9QXZ0 7354 aaKnown RBP3.45□□□□□ -1.86
Pcdha1-202ENSMUST00000193839 Eppk1Q8R0W0 6548 aa3.44□□□□□ -1.86
Pcdha1-202ENSMUST00000193839 Sprr2bO70554 98 aa3.38□□□□□ -1.87
Pcdha1-202ENSMUST00000193839 Gm6217A0A1Y7VJK9 128 aa3.35□□□□□ -1.87
Pcdha1-202ENSMUST00000193839 Kmt2dQ6PDK2 5588 aa3.24□□□□□ -1.89
Pcdha1-202ENSMUST00000193839 A0A1Y7VJH8 109 aa3.2□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 Gm7544A0A1Y7VJ58 118 aa3.2□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 DstQ91ZU6 7393 aaKnown RBP3.19□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 Krtap28-10A0A1Y7VP58 119 aa3.18□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 Gm11568A2A4M2 211 aa3.18□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 Krtap9-1Q64526 186 aa3.18□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 A030005K14RikA0A1Y7VNY1 122 aa3.17□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 Gm11559Q9D3H7 191 aa3.16□□□□□ -1.9
Pcdha1-202ENSMUST00000193839 NebE9Q1W3 7152 aa3.1□□□□□ -1.91
Pcdha1-202ENSMUST00000193839 Krtap5-2Q9D5Z7 189 aa3.06□□□□□ -1.92
Pcdha1-202ENSMUST00000193839 A030005L19RikA0A1Y7VIU2 113 aa3.03□□□□□ -1.92
Pcdha1-202ENSMUST00000193839 1110025L11RikO09048 78 aa3.02□□□□□ -1.93
Pcdha1-202ENSMUST00000193839 Krtap6-5Q925H3 78 aa3.02□□□□□ -1.93
Pcdha1-202ENSMUST00000193839 Muc19Q6PZE0 7524 aa2.99□□□□□ -1.93
Pcdha1-202ENSMUST00000193839 Krtap28-13A0A087WQP5 138 aa2.96□□□□□ -1.94
Pcdha1-202ENSMUST00000193839 A0A1Y7VJ07 166 aa2.89□□□□□ -1.95
Pcdha1-202ENSMUST00000193839 Gm4553A0A1B0GSA9 284 aa2.89□□□□□ -1.95
Pcdha1-202ENSMUST00000193839 Gm11639A0A1D5RLM8 5808 aa2.85□□□□□ -1.95
Pcdha1-202ENSMUST00000193839 Gpr98Q8VHN7 6298 aaKnown RBP2.85□□□□□ -1.95
Pcdha1-202ENSMUST00000193839 Gm10229O08631 77 aa2.79□□□□□ -1.96
Pcdha1-202ENSMUST00000193839 Hmcn1D3YXG0 5634 aa2.76□□□□□ -1.97
Pcdha1-202ENSMUST00000193839 Gm2431E9Q8S1 172 aa2.69□□□□□ -1.98
Pcdha1-202ENSMUST00000193839 Gm10153A0A1B0GRL1 320 aa2.69□□□□□ -1.98
Pcdha1-202ENSMUST00000193839 Gm45337A0A1B0GS71 263 aa2.64□□□□□ -1.99
Pcdha1-202ENSMUST00000193839 Gm40460A0A1B0GR10 244 aa2.6□□□□□ -1.99
Pcdha1-202ENSMUST00000193839 Gm7579A0A1B0GRJ4 243 aa2.6□□□□□ -1.99
Pcdha1-202ENSMUST00000193839 Krtap5-5Q2TA51 241 aa2.6□□□□□ -1.99
Pcdha1-202ENSMUST00000193839 Krtap5-4Q62220 223 aa2.6□□□□□ -1.99
Pcdha1-202ENSMUST00000193839 A030014E15RikA0A1Y7VJV2 120 aa2.58□□□□□ -2
Pcdha1-202ENSMUST00000193839 Phgr1Q8K0G7 91 aa2.54□□□□□ -2
Pcdha1-202ENSMUST00000193839 AhnakE9Q616 5656 aaKnown RBP2.52□□□□□ -2.01
Pcdha1-202ENSMUST00000193839 Gm39115A0A1B0GSH7 232 aa2.42□□□□□ -2.02
Pcdha1-202ENSMUST00000193839 Krtap6-2O08884 159 aa2.31□□□□□ -2.04
Pcdha1-202ENSMUST00000193839 A0A286YCP9 139 aa2.27□□□□□ -2.05
Pcdha1-202ENSMUST00000193839 Krtap21-1Q925H4 128 aa2.24□□□□□ -2.05
Pcdha1-202ENSMUST00000193839 Gm45618A0A1B0GSA0 219 aa2.12□□□□□ -2.07
Pcdha1-202ENSMUST00000193839 Gm11567Q9D141 195 aa2.06□□□□□ -2.08
Pcdha1-202ENSMUST00000193839 Gm29735A0A1B0GT06 219 aa1.96□□□□□ -2.09
Pcdha1-202ENSMUST00000193839 Krtap5-1Q64507 230 aa1.39□□□□□ -2.19
Pcdha1-202ENSMUST00000193839 Gm4559A4IF42 199 aa1.11□□□□□ -2.23
Retrieved 80 of 22,080 RNA–protein pairs in 76.3 ms