RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Syne1Q6ZWR6 8799 aa4,94□□□□□ -1,62
Ccdc88b-201ENSMUST00000113440 Krtap4-1Q3UUY3 169 aa4,93□□□□□ -1,62
Ccdc88b-201ENSMUST00000113440 Lce1eQ9D139 143 aa4,91□□□□□ -1,62
Ccdc88b-201ENSMUST00000113440 Sprr2eO70556 76 aa4,87□□□□□ -1,63
Ccdc88b-201ENSMUST00000113440 Fsip2A2ARZ3 6995 aa4,85□□□□□ -1,63
Ccdc88b-201ENSMUST00000113440 Gm11596B1AQB0 205 aa4,82□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Gm11938Q9D3H4 131 aa4,81□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Sprr2dO70555 85 aa4,81□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Gm11564A2A4L9 201 aa4,79□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Gm11563B1AQ90 168 aa4,79□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Gm11595B1AQA7 289 aa4,79□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Krtap4-8B1AQA8 209 aa4,79□□□□□ -1,64
Ccdc88b-201ENSMUST00000113440 Krtap4-9B1AQA9 244 aa4,75□□□□□ -1,65
Ccdc88b-201ENSMUST00000113440 Sprr2fO70557 76 aa4,74□□□□□ -1,65
Ccdc88b-201ENSMUST00000113440 2300003K06RikA2A4M0 262 aa4,7□□□□□ -1,66
Ccdc88b-201ENSMUST00000113440 Gm11562A0PK51 136 aa4,69□□□□□ -1,66
Ccdc88b-201ENSMUST00000113440 Sprr2hO70559 108 aa4,65□□□□□ -1,67
Ccdc88b-201ENSMUST00000113440 Syne2Q6ZWQ0 6874 aaKnown RBP4,64□□□□□ -1,67
Ccdc88b-201ENSMUST00000113440 Krtap4-13Q9D7P3 165 aa4,63□□□□□ -1,67
Ccdc88b-201ENSMUST00000113440 Krtap4-7Q9D732 168 aa4,61□□□□□ -1,67
Ccdc88b-201ENSMUST00000113440 Krtap31-1Q9D644 177 aa4,6□□□□□ -1,67
Ccdc88b-201ENSMUST00000113440 Lce1kJ3QP15 125 aa4,54□□□□□ -1,68
Ccdc88b-201ENSMUST00000113440 Muc16A0A140LJ72 8478 aa4,49□□□□□ -1,69
Ccdc88b-201ENSMUST00000113440 Lce1a1Q9CQH5 143 aa4,44□□□□□ -1,7
Ccdc88b-201ENSMUST00000113440 ObscnA2AAJ9 8891 aaKnown RBP4,25□□□□□ -1,73
Ccdc88b-201ENSMUST00000113440 Krtap4-16Q91W93 202 aa4,24□□□□□ -1,73
Ccdc88b-201ENSMUST00000113440 Mt3P28184 68 aa4,21□□□□□ -1,74
Ccdc88b-201ENSMUST00000113440 Macf1Q9QXZ0 7354 aaKnown RBP4,2□□□□□ -1,74
Ccdc88b-201ENSMUST00000113440 Krtap6-3A0A087WQL6 57 aa4,17□□□□□ -1,74
Ccdc88b-201ENSMUST00000113440 Mt1P02802 61 aaKnown RBP4,14□□□□□ -1,75
Ccdc88b-201ENSMUST00000113440 Gm11555B1AQ89 175 aa4,13□□□□□ -1,75
Ccdc88b-201ENSMUST00000113440 Krtap20-2E9Q0A8 60 aa4,1□□□□□ -1,75
Ccdc88b-201ENSMUST00000113440 Gm11554B1AQB2 190 aa4,03□□□□□ -1,76
Ccdc88b-201ENSMUST00000113440 Krtap31-2Q8CAY5 177 aa3,89□□□□□ -1,79
Ccdc88b-201ENSMUST00000113440 DstQ91ZU6 7393 aaKnown RBP3,87□□□□□ -1,79
Ccdc88b-201ENSMUST00000113440 Sprr2bO70554 98 aa3,79□□□□□ -1,8
Ccdc88b-201ENSMUST00000113440 NebE9Q1W3 7152 aa3,76□□□□□ -1,81
Ccdc88b-201ENSMUST00000113440 Muc19Q6PZE0 7524 aa3,71□□□□□ -1,82
Ccdc88b-201ENSMUST00000113440 Eppk1Q8R0W0 6548 aa3,66□□□□□ -1,82
Ccdc88b-201ENSMUST00000113440 Gm11568A2A4M2 211 aa3,59□□□□□ -1,84
Ccdc88b-201ENSMUST00000113440 Krtap9-1Q64526 186 aa3,59□□□□□ -1,84
Ccdc88b-201ENSMUST00000113440 Kmt2dQ6PDK2 5588 aa3,56□□□□□ -1,84
Ccdc88b-201ENSMUST00000113440 Gm11559Q9D3H7 191 aa3,4□□□□□ -1,87
Ccdc88b-201ENSMUST00000113440 1110025L11RikO09048 78 aa3,33□□□□□ -1,88
Ccdc88b-201ENSMUST00000113440 Krtap6-5Q925H3 78 aa3,33□□□□□ -1,88
Ccdc88b-201ENSMUST00000113440 Hmcn1D3YXG0 5634 aa3,29□□□□□ -1,88
Ccdc88b-201ENSMUST00000113440 Krtap5-2Q9D5Z7 189 aa3,27□□□□□ -1,89
Ccdc88b-201ENSMUST00000113440 Gpr98Q8VHN7 6298 aaKnown RBP3,24□□□□□ -1,89
Ccdc88b-201ENSMUST00000113440 Gm11639A0A1D5RLM8 5808 aa3,2□□□□□ -1,9
Ccdc88b-201ENSMUST00000113440 Gm10229O08631 77 aa3,08□□□□□ -1,92
Ccdc88b-201ENSMUST00000113440 Gm4553A0A1B0GSA9 284 aa3,03□□□□□ -1,92
Ccdc88b-201ENSMUST00000113440 Gm10153A0A1B0GRL1 320 aa3□□□□□ -1,93
Ccdc88b-201ENSMUST00000113440 A0A1Y7VJH8 109 aa2,93□□□□□ -1,94
Ccdc88b-201ENSMUST00000113440 Gm2431E9Q8S1 172 aa2,92□□□□□ -1,94
Ccdc88b-201ENSMUST00000113440 Phgr1Q8K0G7 91 aa2,89□□□□□ -1,95
Ccdc88b-201ENSMUST00000113440 Gm45337A0A1B0GS71 263 aa2,79□□□□□ -1,96
Ccdc88b-201ENSMUST00000113440 AhnakE9Q616 5656 aaKnown RBP2,79□□□□□ -1,96
Ccdc88b-201ENSMUST00000113440 Gm40460A0A1B0GR10 244 aa2,72□□□□□ -1,97
Ccdc88b-201ENSMUST00000113440 Gm7579A0A1B0GRJ4 243 aa2,72□□□□□ -1,97
Ccdc88b-201ENSMUST00000113440 Krtap5-5Q2TA51 241 aa2,72□□□□□ -1,97
Ccdc88b-201ENSMUST00000113440 Krtap5-4Q62220 223 aa2,72□□□□□ -1,97
Ccdc88b-201ENSMUST00000113440 A030005L19RikA0A1Y7VIU2 113 aa2,69□□□□□ -1,98
Ccdc88b-201ENSMUST00000113440 A0A1Y7VLE6 161 aa2,57□□□□□ -2
Ccdc88b-201ENSMUST00000113440 Krtap6-2O08884 159 aa2,53□□□□□ -2
Ccdc88b-201ENSMUST00000113440 Krtap21-1Q925H4 128 aa2,51□□□□□ -2,01
Ccdc88b-201ENSMUST00000113440 Gm39115A0A1B0GSH7 232 aa2,5□□□□□ -2,01
Ccdc88b-201ENSMUST00000113440 Gm11567Q9D141 195 aa2,36□□□□□ -2,03
Ccdc88b-201ENSMUST00000113440 Gm45618A0A1B0GSA0 219 aa2,1□□□□□ -2,07
Ccdc88b-201ENSMUST00000113440 Gm29735A0A1B0GT06 219 aa2,05□□□□□ -2,08
Ccdc88b-201ENSMUST00000113440 A0A1Y7VJ07 166 aa1,65□□□□□ -2,14
Ccdc88b-201ENSMUST00000113440 Krtap5-1Q64507 230 aa1,5□□□□□ -2,17
Ccdc88b-201ENSMUST00000113440 A0A286YCP9 139 aa1,49□□□□□ -2,17
Ccdc88b-201ENSMUST00000113440 Gm4559A4IF42 199 aa1,11□□□□□ -2,23
Ccdc88b-201ENSMUST00000113440 A030003K21RikA0A1Y7VIM3 128 aa0,95□□□□□ -2,26
Ccdc88b-201ENSMUST00000113440 Gm6217A0A1Y7VJK9 128 aa0,66□□□□□ -2,3
Ccdc88b-201ENSMUST00000113440 Krtap28-13A0A087WQP5 138 aa0,64□□□□□ -2,31
Ccdc88b-201ENSMUST00000113440 Krtap28-10A0A1Y7VP58 119 aa0,33□□□□□ -2,36
Ccdc88b-201ENSMUST00000113440 A030014E15RikA0A1Y7VJV2 120 aa0,22□□□□□ -2,37
Ccdc88b-201ENSMUST00000113440 Gm7544A0A1Y7VJ58 118 aa-0,08□□□□□ -2,42
Ccdc88b-201ENSMUST00000113440 A030005K14RikA0A1Y7VNY1 122 aa-0,15□□□□□ -2,43
Retrieved 80 of 22,080 RNA–protein pairs in 9,6 ms