RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Syne1Q6ZWR6 8799 aa4.94□□□□□ -1.62
Ccdc88b-201ENSMUST00000113440 Krtap4-1Q3UUY3 169 aa4.93□□□□□ -1.62
Ccdc88b-201ENSMUST00000113440 Lce1eQ9D139 143 aa4.91□□□□□ -1.62
Ccdc88b-201ENSMUST00000113440 Sprr2eO70556 76 aa4.87□□□□□ -1.63
Ccdc88b-201ENSMUST00000113440 Fsip2A2ARZ3 6995 aa4.85□□□□□ -1.63
Ccdc88b-201ENSMUST00000113440 Gm11596B1AQB0 205 aa4.82□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Gm11938Q9D3H4 131 aa4.81□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Sprr2dO70555 85 aa4.81□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Gm11564A2A4L9 201 aa4.79□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Gm11563B1AQ90 168 aa4.79□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Gm11595B1AQA7 289 aa4.79□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Krtap4-8B1AQA8 209 aa4.79□□□□□ -1.64
Ccdc88b-201ENSMUST00000113440 Krtap4-9B1AQA9 244 aa4.75□□□□□ -1.65
Ccdc88b-201ENSMUST00000113440 Sprr2fO70557 76 aa4.74□□□□□ -1.65
Ccdc88b-201ENSMUST00000113440 2300003K06RikA2A4M0 262 aa4.7□□□□□ -1.66
Ccdc88b-201ENSMUST00000113440 Gm11562A0PK51 136 aa4.69□□□□□ -1.66
Ccdc88b-201ENSMUST00000113440 Sprr2hO70559 108 aa4.65□□□□□ -1.67
Ccdc88b-201ENSMUST00000113440 Syne2Q6ZWQ0 6874 aaKnown RBP4.64□□□□□ -1.67
Ccdc88b-201ENSMUST00000113440 Krtap4-13Q9D7P3 165 aa4.63□□□□□ -1.67
Ccdc88b-201ENSMUST00000113440 Krtap4-7Q9D732 168 aa4.61□□□□□ -1.67
Ccdc88b-201ENSMUST00000113440 Krtap31-1Q9D644 177 aa4.6□□□□□ -1.67
Ccdc88b-201ENSMUST00000113440 Lce1kJ3QP15 125 aa4.54□□□□□ -1.68
Ccdc88b-201ENSMUST00000113440 Muc16A0A140LJ72 8478 aa4.49□□□□□ -1.69
Ccdc88b-201ENSMUST00000113440 Lce1a1Q9CQH5 143 aa4.44□□□□□ -1.7
Ccdc88b-201ENSMUST00000113440 ObscnA2AAJ9 8891 aaKnown RBP4.25□□□□□ -1.73
Ccdc88b-201ENSMUST00000113440 Krtap4-16Q91W93 202 aa4.24□□□□□ -1.73
Ccdc88b-201ENSMUST00000113440 Mt3P28184 68 aa4.21□□□□□ -1.74
Ccdc88b-201ENSMUST00000113440 Macf1Q9QXZ0 7354 aaKnown RBP4.2□□□□□ -1.74
Ccdc88b-201ENSMUST00000113440 Krtap6-3A0A087WQL6 57 aa4.17□□□□□ -1.74
Ccdc88b-201ENSMUST00000113440 Mt1P02802 61 aaKnown RBP4.14□□□□□ -1.75
Ccdc88b-201ENSMUST00000113440 Gm11555B1AQ89 175 aa4.13□□□□□ -1.75
Ccdc88b-201ENSMUST00000113440 Krtap20-2E9Q0A8 60 aa4.1□□□□□ -1.75
Ccdc88b-201ENSMUST00000113440 Gm11554B1AQB2 190 aa4.03□□□□□ -1.76
Ccdc88b-201ENSMUST00000113440 Krtap31-2Q8CAY5 177 aa3.89□□□□□ -1.79
Ccdc88b-201ENSMUST00000113440 DstQ91ZU6 7393 aaKnown RBP3.87□□□□□ -1.79
Ccdc88b-201ENSMUST00000113440 Sprr2bO70554 98 aa3.79□□□□□ -1.8
Ccdc88b-201ENSMUST00000113440 NebE9Q1W3 7152 aa3.76□□□□□ -1.81
Ccdc88b-201ENSMUST00000113440 Muc19Q6PZE0 7524 aa3.71□□□□□ -1.82
Ccdc88b-201ENSMUST00000113440 Eppk1Q8R0W0 6548 aa3.66□□□□□ -1.82
Ccdc88b-201ENSMUST00000113440 Gm11568A2A4M2 211 aa3.59□□□□□ -1.84
Ccdc88b-201ENSMUST00000113440 Krtap9-1Q64526 186 aa3.59□□□□□ -1.84
Ccdc88b-201ENSMUST00000113440 Kmt2dQ6PDK2 5588 aa3.56□□□□□ -1.84
Ccdc88b-201ENSMUST00000113440 Gm11559Q9D3H7 191 aa3.4□□□□□ -1.87
Ccdc88b-201ENSMUST00000113440 1110025L11RikO09048 78 aa3.33□□□□□ -1.88
Ccdc88b-201ENSMUST00000113440 Krtap6-5Q925H3 78 aa3.33□□□□□ -1.88
Ccdc88b-201ENSMUST00000113440 Hmcn1D3YXG0 5634 aa3.29□□□□□ -1.88
Ccdc88b-201ENSMUST00000113440 Krtap5-2Q9D5Z7 189 aa3.27□□□□□ -1.89
Ccdc88b-201ENSMUST00000113440 Gpr98Q8VHN7 6298 aaKnown RBP3.24□□□□□ -1.89
Ccdc88b-201ENSMUST00000113440 Gm11639A0A1D5RLM8 5808 aa3.2□□□□□ -1.9
Ccdc88b-201ENSMUST00000113440 Gm10229O08631 77 aa3.08□□□□□ -1.92
Ccdc88b-201ENSMUST00000113440 Gm4553A0A1B0GSA9 284 aa3.03□□□□□ -1.92
Ccdc88b-201ENSMUST00000113440 Gm10153A0A1B0GRL1 320 aa3□□□□□ -1.93
Ccdc88b-201ENSMUST00000113440 A0A1Y7VJH8 109 aa2.93□□□□□ -1.94
Ccdc88b-201ENSMUST00000113440 Gm2431E9Q8S1 172 aa2.92□□□□□ -1.94
Ccdc88b-201ENSMUST00000113440 Phgr1Q8K0G7 91 aa2.89□□□□□ -1.95
Ccdc88b-201ENSMUST00000113440 Gm45337A0A1B0GS71 263 aa2.79□□□□□ -1.96
Ccdc88b-201ENSMUST00000113440 AhnakE9Q616 5656 aaKnown RBP2.79□□□□□ -1.96
Ccdc88b-201ENSMUST00000113440 Gm40460A0A1B0GR10 244 aa2.72□□□□□ -1.97
Ccdc88b-201ENSMUST00000113440 Gm7579A0A1B0GRJ4 243 aa2.72□□□□□ -1.97
Ccdc88b-201ENSMUST00000113440 Krtap5-5Q2TA51 241 aa2.72□□□□□ -1.97
Ccdc88b-201ENSMUST00000113440 Krtap5-4Q62220 223 aa2.72□□□□□ -1.97
Ccdc88b-201ENSMUST00000113440 A030005L19RikA0A1Y7VIU2 113 aa2.69□□□□□ -1.98
Ccdc88b-201ENSMUST00000113440 A0A1Y7VLE6 161 aa2.57□□□□□ -2
Ccdc88b-201ENSMUST00000113440 Krtap6-2O08884 159 aa2.53□□□□□ -2
Ccdc88b-201ENSMUST00000113440 Krtap21-1Q925H4 128 aa2.51□□□□□ -2.01
Ccdc88b-201ENSMUST00000113440 Gm39115A0A1B0GSH7 232 aa2.5□□□□□ -2.01
Ccdc88b-201ENSMUST00000113440 Gm11567Q9D141 195 aa2.36□□□□□ -2.03
Ccdc88b-201ENSMUST00000113440 Gm45618A0A1B0GSA0 219 aa2.1□□□□□ -2.07
Ccdc88b-201ENSMUST00000113440 Gm29735A0A1B0GT06 219 aa2.05□□□□□ -2.08
Ccdc88b-201ENSMUST00000113440 A0A1Y7VJ07 166 aa1.65□□□□□ -2.14
Ccdc88b-201ENSMUST00000113440 Krtap5-1Q64507 230 aa1.5□□□□□ -2.17
Ccdc88b-201ENSMUST00000113440 A0A286YCP9 139 aa1.49□□□□□ -2.17
Ccdc88b-201ENSMUST00000113440 Gm4559A4IF42 199 aa1.11□□□□□ -2.23
Ccdc88b-201ENSMUST00000113440 A030003K21RikA0A1Y7VIM3 128 aa0.95□□□□□ -2.26
Ccdc88b-201ENSMUST00000113440 Gm6217A0A1Y7VJK9 128 aa0.66□□□□□ -2.3
Ccdc88b-201ENSMUST00000113440 Krtap28-13A0A087WQP5 138 aa0.64□□□□□ -2.31
Ccdc88b-201ENSMUST00000113440 Krtap28-10A0A1Y7VP58 119 aa0.33□□□□□ -2.36
Ccdc88b-201ENSMUST00000113440 A030014E15RikA0A1Y7VJV2 120 aa0.22□□□□□ -2.37
Ccdc88b-201ENSMUST00000113440 Gm7544A0A1Y7VJ58 118 aa-0.08□□□□□ -2.42
Ccdc88b-201ENSMUST00000113440 A030005K14RikA0A1Y7VNY1 122 aa-0.15□□□□□ -2.43
Retrieved 80 of 22,080 RNA–protein pairs in 20.1 ms