RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Lce3fQ6PAI4 98 aa4.46□□□□□ -1.7
Clcn3-204ENSMUST00000110301 Sprr2iO70560 76 aa4.41□□□□□ -1.7
Clcn3-204ENSMUST00000110301 Lce1bQ9D149 137 aa4.41□□□□□ -1.7
Clcn3-204ENSMUST00000110301 Krtap4-13Q9D7P3 165 aa4.37□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Lce1fB9EJP6 147 aa4.37□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Lce3dE9Q8V1 98 aa4.37□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Lce1cQ9D1C5 147 aa4.37□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Lce1lQ9D1G7 135 aa4.37□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Lce1dQ9D731 133 aa4.37□□□□□ -1.71
Clcn3-204ENSMUST00000110301 2300003K06RikA2A4M0 262 aa4.35□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Gm10142J3KMP7 120 aa4.34□□□□□ -1.71
Clcn3-204ENSMUST00000110301 Muc16A0A140LJ72 8478 aa4.31□□□□□ -1.72
Clcn3-204ENSMUST00000110301 Lce3aQ497I5 98 aa4.28□□□□□ -1.72
Clcn3-204ENSMUST00000110301 Krtap4-7Q9D732 168 aa4.26□□□□□ -1.73
Clcn3-204ENSMUST00000110301 Lce1eQ9D139 143 aa4.23□□□□□ -1.73
Clcn3-204ENSMUST00000110301 Krtap19-4Q925H7 84 aa4.16□□□□□ -1.74
Clcn3-204ENSMUST00000110301 Macf1Q9QXZ0 7354 aaKnown RBP4.16□□□□□ -1.74
Clcn3-204ENSMUST00000110301 Lce1kJ3QP15 125 aa4.14□□□□□ -1.75
Clcn3-204ENSMUST00000110301 Gm11555B1AQ89 175 aa4.13□□□□□ -1.75
Clcn3-204ENSMUST00000110301 Gm11562A0PK51 136 aa4.08□□□□□ -1.76
Clcn3-204ENSMUST00000110301 Gm11938Q9D3H4 131 aa4.08□□□□□ -1.76
Clcn3-204ENSMUST00000110301 Sprr2dO70555 85 aa4.05□□□□□ -1.76
Clcn3-204ENSMUST00000110301 ObscnA2AAJ9 8891 aaKnown RBP3.96□□□□□ -1.78
Clcn3-204ENSMUST00000110301 Gm10024A0A0A0MQA4 119 aa3.92□□□□□ -1.78
Clcn3-204ENSMUST00000110301 Lce1a1Q9CQH5 143 aa3.9□□□□□ -1.79
Clcn3-204ENSMUST00000110301 Krtap6-3A0A087WQL6 57 aa3.89□□□□□ -1.79
Clcn3-204ENSMUST00000110301 Sprr2eO70556 76 aa3.89□□□□□ -1.79
Clcn3-204ENSMUST00000110301 Krtap20-2E9Q0A8 60 aa3.87□□□□□ -1.79
Clcn3-204ENSMUST00000110301 Krtap4-16Q91W93 202 aa3.79□□□□□ -1.8
Clcn3-204ENSMUST00000110301 Sprr2fO70557 76 aa3.78□□□□□ -1.8
Clcn3-204ENSMUST00000110301 Gm11554B1AQB2 190 aa3.76□□□□□ -1.81
Clcn3-204ENSMUST00000110301 Mt1P02802 61 aaKnown RBP3.71□□□□□ -1.82
Clcn3-204ENSMUST00000110301 Sprr2hO70559 108 aa3.65□□□□□ -1.82
Clcn3-204ENSMUST00000110301 Mt3P28184 68 aa3.65□□□□□ -1.83
Clcn3-204ENSMUST00000110301 Muc19Q6PZE0 7524 aa3.62□□□□□ -1.83
Clcn3-204ENSMUST00000110301 DstQ91ZU6 7393 aaKnown RBP3.57□□□□□ -1.84
Clcn3-204ENSMUST00000110301 NebE9Q1W3 7152 aa3.54□□□□□ -1.84
Clcn3-204ENSMUST00000110301 Gm11568A2A4M2 211 aa3.42□□□□□ -1.86
Clcn3-204ENSMUST00000110301 Krtap9-1Q64526 186 aa3.42□□□□□ -1.86
Clcn3-204ENSMUST00000110301 Kmt2dQ6PDK2 5588 aa3.38□□□□□ -1.87
Clcn3-204ENSMUST00000110301 Gm11559Q9D3H7 191 aa3.25□□□□□ -1.89
Clcn3-204ENSMUST00000110301 Hmcn1D3YXG0 5634 aa3.24□□□□□ -1.89
Clcn3-204ENSMUST00000110301 Krtap5-2Q9D5Z7 189 aa3.2□□□□□ -1.9
Clcn3-204ENSMUST00000110301 Gm11639A0A1D5RLM8 5808 aa3.17□□□□□ -1.9
Clcn3-204ENSMUST00000110301 Eppk1Q8R0W0 6548 aa3.16□□□□□ -1.9
Clcn3-204ENSMUST00000110301 Gpr98Q8VHN7 6298 aaKnown RBP3.09□□□□□ -1.91
Clcn3-204ENSMUST00000110301 A0A1Y7VJH8 109 aa3□□□□□ -1.93
Clcn3-204ENSMUST00000110301 Gm4553A0A1B0GSA9 284 aa2.99□□□□□ -1.93
Clcn3-204ENSMUST00000110301 1110025L11RikO09048 78 aa2.91□□□□□ -1.94
Clcn3-204ENSMUST00000110301 Krtap6-5Q925H3 78 aa2.91□□□□□ -1.94
Clcn3-204ENSMUST00000110301 Gm2431E9Q8S1 172 aa2.91□□□□□ -1.94
Clcn3-204ENSMUST00000110301 Gm10153A0A1B0GRL1 320 aa2.89□□□□□ -1.95
Clcn3-204ENSMUST00000110301 Sprr2bO70554 98 aa2.78□□□□□ -1.96
Clcn3-204ENSMUST00000110301 Gm45337A0A1B0GS71 263 aa2.77□□□□□ -1.97
Clcn3-204ENSMUST00000110301 A030005L19RikA0A1Y7VIU2 113 aa2.72□□□□□ -1.97
Clcn3-204ENSMUST00000110301 AhnakE9Q616 5656 aaKnown RBP2.7□□□□□ -1.98
Clcn3-204ENSMUST00000110301 Gm40460A0A1B0GR10 244 aa2.68□□□□□ -1.98
Clcn3-204ENSMUST00000110301 Gm7579A0A1B0GRJ4 243 aa2.68□□□□□ -1.98
Clcn3-204ENSMUST00000110301 Krtap5-5Q2TA51 241 aa2.68□□□□□ -1.98
Clcn3-204ENSMUST00000110301 Krtap5-4Q62220 223 aa2.68□□□□□ -1.98
Clcn3-204ENSMUST00000110301 Gm10229O08631 77 aa2.66□□□□□ -1.98
Clcn3-204ENSMUST00000110301 Krtap28-10A0A1Y7VP58 119 aa2.62□□□□□ -1.99
Clcn3-204ENSMUST00000110301 A0A1Y7VLE6 161 aa2.58□□□□□ -2
Clcn3-204ENSMUST00000110301 Gm39115A0A1B0GSH7 232 aa2.51□□□□□ -2.01
Clcn3-204ENSMUST00000110301 A030005K14RikA0A1Y7VNY1 122 aa2.48□□□□□ -2.01
Clcn3-204ENSMUST00000110301 Krtap28-13A0A087WQP5 138 aa2.48□□□□□ -2.01
Clcn3-204ENSMUST00000110301 Gm7544A0A1Y7VJ58 118 aa2.46□□□□□ -2.02
Clcn3-204ENSMUST00000110301 Gm11567Q9D141 195 aa2.42□□□□□ -2.02
Clcn3-204ENSMUST00000110301 A0A286YCP9 139 aa2.34□□□□□ -2.03
Clcn3-204ENSMUST00000110301 Phgr1Q8K0G7 91 aa2.32□□□□□ -2.04
Clcn3-204ENSMUST00000110301 Krtap6-2O08884 159 aa2.25□□□□□ -2.05
Clcn3-204ENSMUST00000110301 Krtap21-1Q925H4 128 aa2.22□□□□□ -2.05
Clcn3-204ENSMUST00000110301 A030003K21RikA0A1Y7VIM3 128 aa2.2□□□□□ -2.06
Clcn3-204ENSMUST00000110301 Gm45618A0A1B0GSA0 219 aa2.16□□□□□ -2.06
Clcn3-204ENSMUST00000110301 A0A1Y7VJ07 166 aa2.15□□□□□ -2.07
Clcn3-204ENSMUST00000110301 Gm6217A0A1Y7VJK9 128 aa2.1□□□□□ -2.07
Clcn3-204ENSMUST00000110301 Gm29735A0A1B0GT06 219 aa1.99□□□□□ -2.09
Clcn3-204ENSMUST00000110301 A030014E15RikA0A1Y7VJV2 120 aa1.97□□□□□ -2.09
Clcn3-204ENSMUST00000110301 Krtap5-1Q64507 230 aa1.5□□□□□ -2.17
Clcn3-204ENSMUST00000110301 Gm4559A4IF42 199 aa1.2□□□□□ -2.22
Retrieved 80 of 22,080 RNA–protein pairs in 102.5 ms