RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Krtap4-7Q9D732 168 aa7,74□□□□□ -1,17
Upf3a-201ENSMUST00000043767 Sprr2dO70555 85 aa7,7□□□□□ -1,18
Upf3a-201ENSMUST00000043767 Krtap6-3A0A087WQL6 57 aa7,66□□□□□ -1,18
Upf3a-201ENSMUST00000043767 Lce1lQ9D1G7 135 aa7,63□□□□□ -1,19
Upf3a-201ENSMUST00000043767 Gm11938Q9D3H4 131 aa7,62□□□□□ -1,19
Upf3a-201ENSMUST00000043767 Lce1eQ9D139 143 aa7,59□□□□□ -1,19
Upf3a-201ENSMUST00000043767 Lce3bQ9CQM7 98 aa7,58□□□□□ -1,2
Upf3a-201ENSMUST00000043767 A0A1Y7VJH8 109 aa7,38□□□□□ -1,23
Upf3a-201ENSMUST00000043767 Lce1kJ3QP15 125 aa7,35□□□□□ -1,23
Upf3a-201ENSMUST00000043767 Sprr2iO70560 76 aa7,3□□□□□ -1,24
Upf3a-201ENSMUST00000043767 Krtap20-2E9Q0A8 60 aa7,29□□□□□ -1,24
Upf3a-201ENSMUST00000043767 Lce1cQ9D1C5 147 aa7,16□□□□□ -1,26
Upf3a-201ENSMUST00000043767 Krtap19-4Q925H7 84 aa7,16□□□□□ -1,26
Upf3a-201ENSMUST00000043767 Krtap5-2Q9D5Z7 189 aa7,16□□□□□ -1,26
Upf3a-201ENSMUST00000043767 Lce1a1Q9CQH5 143 aa7,15□□□□□ -1,27
Upf3a-201ENSMUST00000043767 Gm11568A2A4M2 211 aa7,12□□□□□ -1,27
Upf3a-201ENSMUST00000043767 Krtap9-1Q64526 186 aa7,12□□□□□ -1,27
Upf3a-201ENSMUST00000043767 Lce1fB9EJP6 147 aa7,09□□□□□ -1,27
Upf3a-201ENSMUST00000043767 Lce3cQ91V05 98 aa7,04□□□□□ -1,28
Upf3a-201ENSMUST00000043767 Gm10100J3QK64 120 aa7□□□□□ -1,29
Upf3a-201ENSMUST00000043767 Mt1P02802 61 aaKnown RBP6,98□□□□□ -1,29
Upf3a-201ENSMUST00000043767 Lce3dE9Q8V1 98 aa6,91□□□□□ -1,3
Upf3a-201ENSMUST00000043767 Gm10142J3KMP7 120 aa6,89□□□□□ -1,31
Upf3a-201ENSMUST00000043767 Lce3eF8VQJ0 98 aa6,88□□□□□ -1,31
Upf3a-201ENSMUST00000043767 Lce3fQ6PAI4 98 aa6,88□□□□□ -1,31
Upf3a-201ENSMUST00000043767 ObscnA2AAJ9 8891 aaKnown RBP6,86□□□□□ -1,31
Upf3a-201ENSMUST00000043767 Macf1Q9QXZ0 7354 aaKnown RBP6,8□□□□□ -1,32
Upf3a-201ENSMUST00000043767 Gm11559Q9D3H7 191 aa6,76□□□□□ -1,33
Upf3a-201ENSMUST00000043767 Sprr2hO70559 108 aa6,72□□□□□ -1,33
Upf3a-201ENSMUST00000043767 Gm4553A0A1B0GSA9 284 aa6,69□□□□□ -1,34
Upf3a-201ENSMUST00000043767 Gm10153A0A1B0GRL1 320 aa6,66□□□□□ -1,34
Upf3a-201ENSMUST00000043767 Sprr2eO70556 76 aa6,65□□□□□ -1,35
Upf3a-201ENSMUST00000043767 Gm11554B1AQB2 190 aa6,61□□□□□ -1,35
Upf3a-201ENSMUST00000043767 Lce3aQ497I5 98 aa6,57□□□□□ -1,36
Upf3a-201ENSMUST00000043767 Gm45337A0A1B0GS71 263 aa6,54□□□□□ -1,36
Upf3a-201ENSMUST00000043767 Gm2431E9Q8S1 172 aa6,5□□□□□ -1,37
Upf3a-201ENSMUST00000043767 Sprr2fO70557 76 aa6,5□□□□□ -1,37
Upf3a-201ENSMUST00000043767 Hmcn1D3YXG0 5634 aa6,43□□□□□ -1,38
Upf3a-201ENSMUST00000043767 Kmt2dQ6PDK2 5588 aa6,35□□□□□ -1,39
Upf3a-201ENSMUST00000043767 Gm40460A0A1B0GR10 244 aa6,32□□□□□ -1,4
Upf3a-201ENSMUST00000043767 Gm7579A0A1B0GRJ4 243 aa6,32□□□□□ -1,4
Upf3a-201ENSMUST00000043767 Krtap5-5Q2TA51 241 aa6,32□□□□□ -1,4
Upf3a-201ENSMUST00000043767 Krtap5-4Q62220 223 aa6,32□□□□□ -1,4
Upf3a-201ENSMUST00000043767 A030005L19RikA0A1Y7VIU2 113 aa6,29□□□□□ -1,4
Upf3a-201ENSMUST00000043767 Mt3P28184 68 aa6,29□□□□□ -1,4
Upf3a-201ENSMUST00000043767 Krtap31-1Q9D644 177 aa6,27□□□□□ -1,41
Upf3a-201ENSMUST00000043767 A0A1Y7VLE6 161 aa6,17□□□□□ -1,42
Upf3a-201ENSMUST00000043767 Eppk1Q8R0W0 6548 aa6,15□□□□□ -1,43
Upf3a-201ENSMUST00000043767 Gm39115A0A1B0GSH7 232 aa6,01□□□□□ -1,45
Upf3a-201ENSMUST00000043767 Muc19Q6PZE0 7524 aa5,99□□□□□ -1,45
Upf3a-201ENSMUST00000043767 DstQ91ZU6 7393 aaKnown RBP5,89□□□□□ -1,47
Upf3a-201ENSMUST00000043767 Krtap4-16Q91W93 202 aa5,86□□□□□ -1,47
Upf3a-201ENSMUST00000043767 Gm11639A0A1D5RLM8 5808 aa5,83□□□□□ -1,48
Upf3a-201ENSMUST00000043767 Gm10024A0A0A0MQA4 119 aa5,58□□□□□ -1,52
Upf3a-201ENSMUST00000043767 AhnakE9Q616 5656 aaKnown RBP5,46□□□□□ -1,54
Upf3a-201ENSMUST00000043767 NebE9Q1W3 7152 aa5,44□□□□□ -1,54
Upf3a-201ENSMUST00000043767 Gm45618A0A1B0GSA0 219 aa5,35□□□□□ -1,55
Upf3a-201ENSMUST00000043767 Gpr98Q8VHN7 6298 aaKnown RBP5,34□□□□□ -1,55
Upf3a-201ENSMUST00000043767 Muc16A0A140LJ72 8478 aa5,34□□□□□ -1,56
Upf3a-201ENSMUST00000043767 Krtap28-13A0A087WQP5 138 aa5,19□□□□□ -1,58
Upf3a-201ENSMUST00000043767 Krtap28-10A0A1Y7VP58 119 aa5,17□□□□□ -1,58
Upf3a-201ENSMUST00000043767 1110025L11RikO09048 78 aa5,17□□□□□ -1,58
Upf3a-201ENSMUST00000043767 Krtap6-5Q925H3 78 aa5,17□□□□□ -1,58
Upf3a-201ENSMUST00000043767 Gm7544A0A1Y7VJ58 118 aa5,13□□□□□ -1,59
Upf3a-201ENSMUST00000043767 A030005K14RikA0A1Y7VNY1 122 aa5,12□□□□□ -1,59
Upf3a-201ENSMUST00000043767 A0A1Y7VJ07 166 aa5,06□□□□□ -1,6
Upf3a-201ENSMUST00000043767 Gm29735A0A1B0GT06 219 aa4,71□□□□□ -1,65
Upf3a-201ENSMUST00000043767 A030014E15RikA0A1Y7VJV2 120 aa4,7□□□□□ -1,66
Upf3a-201ENSMUST00000043767 Gm11567Q9D141 195 aa4,66□□□□□ -1,66
Upf3a-201ENSMUST00000043767 A0A286YCP9 139 aa4,65□□□□□ -1,67
Upf3a-201ENSMUST00000043767 Krtap31-2Q8CAY5 177 aa4,61□□□□□ -1,67
Upf3a-201ENSMUST00000043767 Gm10229O08631 77 aa4,6□□□□□ -1,67
Upf3a-201ENSMUST00000043767 Sprr2bO70554 98 aa4,58□□□□□ -1,68
Upf3a-201ENSMUST00000043767 A030003K21RikA0A1Y7VIM3 128 aa4,49□□□□□ -1,69
Upf3a-201ENSMUST00000043767 Gm6217A0A1Y7VJK9 128 aa4,47□□□□□ -1,69
Upf3a-201ENSMUST00000043767 Krtap21-1Q925H4 128 aa4,22□□□□□ -1,73
Upf3a-201ENSMUST00000043767 Krtap6-2O08884 159 aa3,99□□□□□ -1,77
Upf3a-201ENSMUST00000043767 Phgr1Q8K0G7 91 aa3,93□□□□□ -1,78
Upf3a-201ENSMUST00000043767 Krtap5-1Q64507 230 aa3,23□□□□□ -1,89
Upf3a-201ENSMUST00000043767 Gm4559A4IF42 199 aa2,73□□□□□ -1,97
Retrieved 80 of 22,080 RNA–protein pairs in 57,5 ms