RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Krtap4-8B1AQA8 209 aa3.88□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Muc5bE9Q5I3 4800 aa3.88□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Lce1eQ9D139 143 aa3.87□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Mdn1A2ANY6 5589 aaKnown RBP3.86□□□□□ -1.79
Pcif1-201ENSMUST00000041643 Krtap19-4Q925H7 84 aa3.82□□□□□ -1.8
Pcif1-201ENSMUST00000041643 Krtap4-9B1AQA9 244 aa3.81□□□□□ -1.8
Pcif1-201ENSMUST00000041643 2300003K06RikA2A4M0 262 aa3.78□□□□□ -1.81
Pcif1-201ENSMUST00000041643 SspoQ8CG65 4998 aa3.75□□□□□ -1.81
Pcif1-201ENSMUST00000041643 Krtap4-13Q9D7P3 165 aa3.72□□□□□ -1.81
Pcif1-201ENSMUST00000041643 Krtap4-7Q9D732 168 aa3.71□□□□□ -1.82
Pcif1-201ENSMUST00000041643 Sprr2fO70557 76 aa3.7□□□□□ -1.82
Pcif1-201ENSMUST00000041643 Syne2Q6ZWQ0 6874 aaKnown RBP3.69□□□□□ -1.82
Pcif1-201ENSMUST00000041643 Gm10024A0A0A0MQA4 119 aa3.68□□□□□ -1.82
Pcif1-201ENSMUST00000041643 Sprr2eO70556 76 aa3.68□□□□□ -1.82
Pcif1-201ENSMUST00000041643 Gm11562A0PK51 136 aa3.59□□□□□ -1.83
Pcif1-201ENSMUST00000041643 Lce1kJ3QP15 125 aa3.58□□□□□ -1.84
Pcif1-201ENSMUST00000041643 Gm11938Q9D3H4 131 aa3.55□□□□□ -1.84
Pcif1-201ENSMUST00000041643 Sprr2dO70555 85 aa3.54□□□□□ -1.84
Pcif1-201ENSMUST00000041643 Fsip2A2ARZ3 6995 aa3.52□□□□□ -1.85
Pcif1-201ENSMUST00000041643 Krtap6-3A0A087WQL6 57 aa3.47□□□□□ -1.85
Pcif1-201ENSMUST00000041643 Lce1a1Q9CQH5 143 aa3.41□□□□□ -1.86
Pcif1-201ENSMUST00000041643 Mt3P28184 68 aa3.36□□□□□ -1.87
Pcif1-201ENSMUST00000041643 Sprr2hO70559 108 aa3.35□□□□□ -1.87
Pcif1-201ENSMUST00000041643 Gm11555B1AQ89 175 aa3.3□□□□□ -1.88
Pcif1-201ENSMUST00000041643 Krtap31-1Q9D644 177 aa3.3□□□□□ -1.88
Pcif1-201ENSMUST00000041643 Krtap20-2E9Q0A8 60 aa3.25□□□□□ -1.89
Pcif1-201ENSMUST00000041643 Mt1P02802 61 aaKnown RBP3.25□□□□□ -1.89
Pcif1-201ENSMUST00000041643 Gm11554B1AQB2 190 aa3.23□□□□□ -1.89
Pcif1-201ENSMUST00000041643 Syne1Q6ZWR6 8799 aa3.12□□□□□ -1.91
Pcif1-201ENSMUST00000041643 Krtap4-16Q91W93 202 aa3.03□□□□□ -1.92
Pcif1-201ENSMUST00000041643 Krtap31-2Q8CAY5 177 aa2.98□□□□□ -1.93
Pcif1-201ENSMUST00000041643 Eppk1Q8R0W0 6548 aa2.8□□□□□ -1.96
Pcif1-201ENSMUST00000041643 Gm11568A2A4M2 211 aa2.78□□□□□ -1.97
Pcif1-201ENSMUST00000041643 Krtap9-1Q64526 186 aa2.78□□□□□ -1.97
Pcif1-201ENSMUST00000041643 ObscnA2AAJ9 8891 aaKnown RBP2.76□□□□□ -1.97
Pcif1-201ENSMUST00000041643 Sprr2bO70554 98 aa2.76□□□□□ -1.97
Pcif1-201ENSMUST00000041643 Gm11559Q9D3H7 191 aa2.76□□□□□ -1.97
Pcif1-201ENSMUST00000041643 Muc16A0A140LJ72 8478 aa2.73□□□□□ -1.97
Pcif1-201ENSMUST00000041643 DstQ91ZU6 7393 aaKnown RBP2.66□□□□□ -1.98
Pcif1-201ENSMUST00000041643 Macf1Q9QXZ0 7354 aaKnown RBP2.66□□□□□ -1.98
Pcif1-201ENSMUST00000041643 Kmt2dQ6PDK2 5588 aa2.6□□□□□ -1.99
Pcif1-201ENSMUST00000041643 1110025L11RikO09048 78 aa2.58□□□□□ -2
Pcif1-201ENSMUST00000041643 Krtap6-5Q925H3 78 aa2.58□□□□□ -2
Pcif1-201ENSMUST00000041643 Krtap5-2Q9D5Z7 189 aa2.57□□□□□ -2
Pcif1-201ENSMUST00000041643 NebE9Q1W3 7152 aa2.49□□□□□ -2.01
Pcif1-201ENSMUST00000041643 Gm10229O08631 77 aa2.42□□□□□ -2.02
Pcif1-201ENSMUST00000041643 Gm4553A0A1B0GSA9 284 aa2.4□□□□□ -2.02
Pcif1-201ENSMUST00000041643 Gm2431E9Q8S1 172 aa2.32□□□□□ -2.04
Pcif1-201ENSMUST00000041643 Muc19Q6PZE0 7524 aa2.28□□□□□ -2.04
Pcif1-201ENSMUST00000041643 Gm10153A0A1B0GRL1 320 aa2.26□□□□□ -2.05
Pcif1-201ENSMUST00000041643 Gm11639A0A1D5RLM8 5808 aa2.25□□□□□ -2.05
Pcif1-201ENSMUST00000041643 Hmcn1D3YXG0 5634 aa2.24□□□□□ -2.05
Pcif1-201ENSMUST00000041643 A030005L19RikA0A1Y7VIU2 113 aa2.2□□□□□ -2.06
Pcif1-201ENSMUST00000041643 Gm45337A0A1B0GS71 263 aa2.17□□□□□ -2.06
Pcif1-201ENSMUST00000041643 Gpr98Q8VHN7 6298 aaKnown RBP2.16□□□□□ -2.06
Pcif1-201ENSMUST00000041643 A0A1Y7VJH8 109 aa2.13□□□□□ -2.07
Pcif1-201ENSMUST00000041643 Gm40460A0A1B0GR10 244 aa2.13□□□□□ -2.07
Pcif1-201ENSMUST00000041643 Gm7579A0A1B0GRJ4 243 aa2.13□□□□□ -2.07
Pcif1-201ENSMUST00000041643 Krtap5-5Q2TA51 241 aa2.13□□□□□ -2.07
Pcif1-201ENSMUST00000041643 Krtap5-4Q62220 223 aa2.13□□□□□ -2.07
Pcif1-201ENSMUST00000041643 Phgr1Q8K0G7 91 aa2.12□□□□□ -2.07
Pcif1-201ENSMUST00000041643 AhnakE9Q616 5656 aaKnown RBP2.07□□□□□ -2.08
Pcif1-201ENSMUST00000041643 Gm39115A0A1B0GSH7 232 aa2□□□□□ -2.09
Pcif1-201ENSMUST00000041643 Krtap6-2O08884 159 aa1.97□□□□□ -2.09
Pcif1-201ENSMUST00000041643 Krtap21-1Q925H4 128 aa1.9□□□□□ -2.11
Pcif1-201ENSMUST00000041643 A0A1Y7VLE6 161 aa1.81□□□□□ -2.12
Pcif1-201ENSMUST00000041643 Gm11567Q9D141 195 aa1.75□□□□□ -2.13
Pcif1-201ENSMUST00000041643 Gm45618A0A1B0GSA0 219 aa1.71□□□□□ -2.14
Pcif1-201ENSMUST00000041643 Gm29735A0A1B0GT06 219 aa1.6□□□□□ -2.15
Pcif1-201ENSMUST00000041643 Krtap5-1Q64507 230 aa1.25□□□□□ -2.21
Pcif1-201ENSMUST00000041643 A0A1Y7VJ07 166 aa1.18□□□□□ -2.22
Pcif1-201ENSMUST00000041643 A0A286YCP9 139 aa1.04□□□□□ -2.24
Pcif1-201ENSMUST00000041643 Gm4559A4IF42 199 aa0.85□□□□□ -2.27
Pcif1-201ENSMUST00000041643 Krtap28-10A0A1Y7VP58 119 aa0.7□□□□□ -2.3
Pcif1-201ENSMUST00000041643 A030003K21RikA0A1Y7VIM3 128 aa0.68□□□□□ -2.3
Pcif1-201ENSMUST00000041643 Krtap28-13A0A087WQP5 138 aa0.63□□□□□ -2.31
Pcif1-201ENSMUST00000041643 A030014E15RikA0A1Y7VJV2 120 aa0.53□□□□□ -2.32
Pcif1-201ENSMUST00000041643 A030005K14RikA0A1Y7VNY1 122 aa0.49□□□□□ -2.33
Pcif1-201ENSMUST00000041643 Gm6217A0A1Y7VJK9 128 aa0.47□□□□□ -2.33
Pcif1-201ENSMUST00000041643 Gm7544A0A1Y7VJ58 118 aa0.29□□□□□ -2.36
Retrieved 80 of 22,080 RNA–protein pairs in 8.7 ms