RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SNCAIPQ9Y6H5 919 aa10.9□□□□□ -0.66
NUP54-207ENST00000508583 SIPA1L1O43166 1804 aa10.9□□□□□ -0.66
NUP54-207ENST00000508583 LAMB1P07942 1786 aa10.9□□□□□ -0.67
NUP54-207ENST00000508583 CXCL11O14625 94 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 CETPP11597 493 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 NT5C2P49902 561 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 PLCD1P51178 756 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 GABPAQ06546 454 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 PDE4BQ07343 736 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 ALX1Q15699 326 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 SLC4A8Q2Y0W8 1093 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 TATDN1Q6P1N9 297 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 CTR9Q6PD62 1173 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 C16orf86Q6ZW13 317 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 IFNL3Q8IZI9 196 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 CTNNA3Q9UI47 895 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 MYH8P13535 1937 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 ROBO3Q96MS0 1386 aa10.89□□□□□ -0.67
NUP54-207ENST00000508583 USP17L5A8MUK1 530 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 MINDY4BA8MYZ0 360 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 SLURP2P0DP57 97 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 PCP11498 1178 aaKnown RBP10.88□□□□□ -0.67
NUP54-207ENST00000508583 PTPRAP18433 802 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 CHMLP26374 656 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 KIF23Q02241 960 aaPredicted RBP10.88□□□□□ -0.67
NUP54-207ENST00000508583 ABCB5Q2M3G0 1257 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 PPP4R3BQ5MIZ7 849 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 KIAA1211Q6ZU35 1233 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 FASTKD5Q7L8L6 764 aaKnown RBP10.88□□□□□ -0.67
NUP54-207ENST00000508583 ZIC5Q96T25 663 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 DSCC1Q9BVC3 393 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 MKNK2Q9HBH9 465 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 SAGE1Q9NXZ1 904 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 ZHX2Q9Y6X8 837 aa10.88□□□□□ -0.67
NUP54-207ENST00000508583 ATAD5Q96QE3 1844 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 FAM196BA6NMK8 535 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 EIF5BO60841 1220 aaKnown RBP10.87□□□□□ -0.67
NUP54-207ENST00000508583 HSPD1P10809 573 aaKnown RBP10.87□□□□□ -0.67
NUP54-207ENST00000508583 TM4SF4P48230 202 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 PPARAQ07869 468 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 MKRN3Q13064 507 aaKnown RBP10.87□□□□□ -0.67
NUP54-207ENST00000508583 CCDC129Q6ZRS4 1044 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 TMEM179Q6ZVK1 233 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 ZNF280CQ8ND82 737 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 RNF41Q9H4P4 317 aaPredicted RBP10.87□□□□□ -0.67
NUP54-207ENST00000508583 SH2D4AQ9H788 454 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 DNAJC18Q9H819 358 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 EPB41L4AQ9HCS5 686 aaPredicted RBP10.87□□□□□ -0.67
NUP54-207ENST00000508583 ZCCHC17Q9NP64 241 aaKnown RBP10.87□□□□□ -0.67
NUP54-207ENST00000508583 ZBTB21Q9ULJ3 1066 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 KCNH4Q9UQ05 1017 aa10.87□□□□□ -0.67
NUP54-207ENST00000508583 TESPA1A2RU30 521 aaPredicted RBP10.86□□□□□ -0.67
NUP54-207ENST00000508583 MPHOSPH10O00566 681 aaKnown RBP10.86□□□□□ -0.67
NUP54-207ENST00000508583 IRF6O14896 467 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 CDC45O75419 566 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 GH2P01242 217 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 SHMT1P34896 483 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 CDK8P49336 464 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 IMMTQ16891 758 aaKnown RBP10.86□□□□□ -0.67
NUP54-207ENST00000508583 ZNF589Q86UQ0 364 aaPredicted RBP10.86□□□□□ -0.67
NUP54-207ENST00000508583 ZNF444Q8N0Y2 327 aaPredicted RBP10.86□□□□□ -0.67
NUP54-207ENST00000508583 WDR18Q9BV38 432 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 WBP1LQ9NX94 342 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 ANAPC4Q9UJX5 808 aa10.86□□□□□ -0.67
NUP54-207ENST00000508583 CCL15-CCL14A0A0B4J2E2 113 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 TRIM75PA6NK02 468 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 C19orf81C9J6K1 198 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 SGSM2O43147 1006 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 GDF11O95390 407 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 FGAP02671 866 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 CYP2D6P10635 497 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 USP14P54578 494 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 PABPC4Q13310 644 aaKnown RBP eCLIP10.85□□□□□ -0.67
NUP54-207ENST00000508583 RAB3GAP1Q15042 981 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 CCL15Q16663 113 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 IFNL1Q8IU54 200 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 FEZ1Q99689 392 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 TMOD4Q9NZQ9 345 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 AFG3L2Q9Y4W6 797 aa10.85□□□□□ -0.67
NUP54-207ENST00000508583 CYP2D7A0A087X1C5 515 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 A0A0G2JLL6 359 aaPredicted RBP10.84□□□□□ -0.67
NUP54-207ENST00000508583 USP17L10C9JJH3 530 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 ZNF213O14771 459 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 HSPA1AP0DMV8 641 aaKnown RBP10.84□□□□□ -0.67
NUP54-207ENST00000508583 HSPA1BP0DMV9 641 aaKnown RBP10.84□□□□□ -0.67
NUP54-207ENST00000508583 GJA5P36382 358 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 VPS53Q5VIR6 699 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 PRRT2Q7Z6L0 340 aaPredicted RBP10.84□□□□□ -0.67
NUP54-207ENST00000508583 PROCA1Q8NCQ7 364 aaPredicted RBP10.84□□□□□ -0.67
NUP54-207ENST00000508583 SLC44A5Q8NCS7 719 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 DYNLL2Q96FJ2 89 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 MS4A4AQ96JQ5 239 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 KANSL2Q9H9L4 492 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 ARHGEF10LQ9HCE6 1279 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 PNMA3Q9UL41 463 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 SLC45A1Q9Y2W3 748 aa10.84□□□□□ -0.67
NUP54-207ENST00000508583 FOXP2O15409 715 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 TSPY3P0CV98 308 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 TSPY8P0CW00 308 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 CTCFP49711 727 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms