RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 KIAA0100Q14667 2235 aaKnown RBP12.87□□□□□ -0.35
VPS4B-207ENST00000591519 CXCL11O14625 94 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 NUDT7P0C024 238 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 TRIM27P14373 513 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 PRMT2P55345 433 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 LACTBP83111 547 aaPredicted RBP12.87□□□□□ -0.35
VPS4B-207ENST00000591519 TFCP2Q12800 502 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 MOGSQ13724 837 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 MVPQ14764 893 aaKnown RBP12.87□□□□□ -0.35
VPS4B-207ENST00000591519 NBPF11Q86T75 865 aa12.87□□□□□ -0.35
VPS4B-207ENST00000591519 AK9Q5TCS8 1911 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 MYH2Q9UKX2 1941 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 GPR75-ASB3A0A0A6YYF3 556 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 BCAR3O75815 825 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 MAP4K4O95819 1239 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-207ENST00000591519 GNAI2P04899 355 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 RGS3P49796 1198 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 KIF22Q14807 665 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 SH3BP5LQ7L8J4 393 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-207ENST00000591519 ZNF333Q96JL9 665 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 ABCF2Q9UG63 623 aa12.86□□□□□ -0.35
VPS4B-207ENST00000591519 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-207ENST00000591519 RBBP6Q7Z6E9 1792 aaKnown RBP12.86□□□□□ -0.35
VPS4B-207ENST00000591519 RFX7Q2KHR2 1363 aa12.85□□□□□ -0.35
VPS4B-207ENST00000591519 PDHXO00330 501 aa12.85□□□□□ -0.35
VPS4B-207ENST00000591519 DZIP1Q86YF9 867 aaKnown RBP12.85□□□□□ -0.35
VPS4B-207ENST00000591519 ZNF384Q8TF68 577 aa12.85□□□□□ -0.35
VPS4B-207ENST00000591519 HMG20BQ9P0W2 317 aa12.85□□□□□ -0.35
VPS4B-207ENST00000591519 PTCH2Q9Y6C5 1203 aa12.85□□□□□ -0.35
VPS4B-207ENST00000591519 PNMA6EA0A0J9YXQ4 647 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 DDTLA6NHG4 134 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-207ENST00000591519 TBC1D12O60347 775 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 EN2P19622 333 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-207ENST00000591519 RHBDL3P58872 404 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 MECOMQ03112 1051 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 SLC9C1Q4G0N8 1177 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 GPAT2Q6NUI2 795 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 ERICH6Q7L0X2 663 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 SCYL3Q8IZE3 742 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 TMC2Q8TDI7 906 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 NEUROD6Q96NK8 337 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 ARHGAP39Q9C0H5 1083 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 AFG3L2Q9Y4W6 797 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 CENPFP49454 3210 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 MROH7-TTC4A0A0A0MT08 1334 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 ADGRA2Q96PE1 1338 aa12.84□□□□□ -0.35
VPS4B-207ENST00000591519 CTNND1O60716 968 aaKnown RBP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 LDHCP07864 332 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 PTPRAP18433 802 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 ARID4AP29374 1257 aaPredicted RBP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 BTDP43251 543 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 G3BP1Q13283 466 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 FASTKD5Q7L8L6 764 aaKnown RBP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 SPATA5Q8NB90 893 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 FRAT1Q92837 279 aaPredicted RBP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 NSUN4Q96CB9 384 aaKnown RBP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 GPR108Q9NPR9 543 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 DDX4Q9NQI0 724 aaKnown RBP12.83□□□□□ -0.36
VPS4B-207ENST00000591519 TNNQ9UQP3 1299 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 ZHX2Q9Y6X8 837 aa12.83□□□□□ -0.36
VPS4B-207ENST00000591519 A0A0G2JLL6 359 aaPredicted RBP12.82□□□□□ -0.36
VPS4B-207ENST00000591519 IGSF3O75054 1194 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 UQCRFS1P1P0C7P4 283 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 HOXD10P28358 340 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 CTGFP29279 349 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 GSTO1P78417 241 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 ZKSCAN2Q63HK3 967 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 PRRT2Q7Z6L0 340 aaPredicted RBP12.82□□□□□ -0.36
VPS4B-207ENST00000591519 ZSCAN29Q8IWY8 852 aaPredicted RBP12.82□□□□□ -0.36
VPS4B-207ENST00000591519 CLUAP1Q96AJ1 413 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 PICK1Q9NRD5 415 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 CPA4Q9UI42 421 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 SLC45A1Q9Y2W3 748 aa12.82□□□□□ -0.36
VPS4B-207ENST00000591519 BCRP11274 1271 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 PSMC4P43686 418 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 ATP8B2P98198 1209 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 GORABQ5T7V8 394 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 TBC1D9Q6ZT07 1266 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 TMEM57Q8N5G2 664 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 SSH3Q8TE77 659 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 TRIM47Q96LD4 638 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 PARK7Q99497 189 aaKnown RBP12.81□□□□□ -0.36
VPS4B-207ENST00000591519 SRRDQ9UH36 339 aa12.81□□□□□ -0.36
VPS4B-207ENST00000591519 MCAMP43121 646 aa12.8□□□□□ -0.36
VPS4B-207ENST00000591519 PI16Q6UXB8 463 aa12.8□□□□□ -0.36
VPS4B-207ENST00000591519 GCC1Q96CN9 775 aa12.8□□□□□ -0.36
VPS4B-207ENST00000591519 ZNF512BQ96KM6 892 aaPredicted RBP12.8□□□□□ -0.36
VPS4B-207ENST00000591519 NOP58Q9Y2X3 529 aaKnown RBP12.8□□□□□ -0.36
VPS4B-207ENST00000591519 PCDHGA4Q9Y5G9 962 aa12.8□□□□□ -0.36
VPS4B-207ENST00000591519 DOCK2Q92608 1830 aa12.8□□□□□ -0.36
VPS4B-207ENST00000591519 MKI67P46013 3256 aaKnown RBP12.8□□□□□ -0.36
VPS4B-207ENST00000591519 COL2A1P02458 1487 aaPredicted RBP12.79□□□□□ -0.36
VPS4B-207ENST00000591519 ZBTB7BO15156 539 aaPredicted RBP12.79□□□□□ -0.36
VPS4B-207ENST00000591519 SLURP2P0DP57 97 aa12.79□□□□□ -0.36
VPS4B-207ENST00000591519 CYP2C8P10632 490 aa12.79□□□□□ -0.36
VPS4B-207ENST00000591519 OSBPP22059 807 aa12.79□□□□□ -0.36
VPS4B-207ENST00000591519 PICALMQ13492 652 aa12.79□□□□□ -0.36
VPS4B-207ENST00000591519 SLC4A8Q2Y0W8 1093 aa12.79□□□□□ -0.36
VPS4B-207ENST00000591519 SH3TC2Q8TF17 1288 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms