RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 CYP2D7A0A087X1C5 515 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 GSG1L2A8MUP6 293 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 FAM155AB1AL88 458 aaPredicted RBP17.2■□□□□ 0.34
USP3-221ENST00000561442 APPP05067 770 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 PLCD1P51178 756 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 MAP3K10Q02779 954 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 CNKSR2Q8WXI2 1034 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 CCDC102AQ96A19 550 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 DDRGK1Q96HY6 314 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 ZIC5Q96T25 663 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 HELLSQ9NRZ9 838 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 ZNF112Q9UJU3 913 aa17.2■□□□□ 0.34
USP3-221ENST00000561442 PHF20L1A8MW92 1017 aa17.19■□□□□ 0.34
USP3-221ENST00000561442 CWC27Q6UX04 472 aaKnown RBP17.19■□□□□ 0.34
USP3-221ENST00000561442 TTC6Q86TZ1 520 aa17.19■□□□□ 0.34
USP3-221ENST00000561442 ZNF589Q86UQ0 364 aaPredicted RBP17.19■□□□□ 0.34
USP3-221ENST00000561442 DNAJC18Q9H819 358 aa17.19■□□□□ 0.34
USP3-221ENST00000561442 EPB41L4AQ9HCS5 686 aaPredicted RBP17.19■□□□□ 0.34
USP3-221ENST00000561442 SNCAIPQ9Y6H5 919 aa17.19■□□□□ 0.34
USP3-221ENST00000561442 USP17L12C9JPN9 530 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 USP17L21D6R901 530 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 SMIM22K7EJ46 135 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 TBC1D12O60347 775 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 GNAT2P19087 354 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 GJA5P36382 358 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 TDO2P48775 406 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 RRP1BQ14684 758 aaKnown RBP17.18■□□□□ 0.34
USP3-221ENST00000561442 MCMDC2Q4G0Z9 681 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 TICAM2Q86XR7 235 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 FOXP4Q8IVH2 680 aaPredicted RBP17.18■□□□□ 0.34
USP3-221ENST00000561442 WNK4Q96J92 1243 aa17.18■□□□□ 0.34
USP3-221ENST00000561442 HERC5Q9UII4 1024 aaKnown RBP17.18■□□□□ 0.34
USP3-221ENST00000561442 UNCXA6NJT0 531 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 PATL2C9JE40 543 aaKnown RBP17.17■□□□□ 0.34
USP3-221ENST00000561442 HIP1O00291 1037 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 NOGQ13253 232 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 VPS53Q5VIR6 699 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 SPRYD7Q5W111 196 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 CTR9Q6PD62 1173 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 METTL16Q86W50 562 aaKnown RBP17.17■□□□□ 0.34
USP3-221ENST00000561442 AMOTL1Q8IY63 956 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 OPTNQ96CV9 577 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 DYNLL2Q96FJ2 89 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.17■□□□□ 0.34
USP3-221ENST00000561442 SERPINB13Q9UIV8 391 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 MYH7P12883 1935 aa17.17■□□□□ 0.34
USP3-221ENST00000561442 KIF23Q02241 960 aaPredicted RBP17.16■□□□□ 0.34
USP3-221ENST00000561442 NOL9Q5SY16 702 aaKnown RBP17.16■□□□□ 0.34
USP3-221ENST00000561442 GIMAP6Q6P9H5 292 aa17.16■□□□□ 0.34
USP3-221ENST00000561442 IFNL3Q8IZI9 196 aa17.16■□□□□ 0.34
USP3-221ENST00000561442 OTUD5Q96G74 571 aa17.16■□□□□ 0.34
USP3-221ENST00000561442 EHD4Q9H223 541 aa17.16■□□□□ 0.34
USP3-221ENST00000561442 PICK1Q9NRD5 415 aa17.16■□□□□ 0.34
USP3-221ENST00000561442 CCDC171Q6TFL3 1326 aa17.16■□□□□ 0.34
USP3-221ENST00000561442 MINDY4BA8MYZ0 360 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 FOXP2O15409 715 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 CTNND1O60716 968 aaKnown RBP17.15■□□□□ 0.34
USP3-221ENST00000561442 GDF11O95390 407 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 SHROOM1Q2M3G4 852 aaPredicted RBP17.15■□□□□ 0.34
USP3-221ENST00000561442 C12orf60Q5U649 245 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 CCDC84Q86UT8 332 aaPredicted RBP17.15■□□□□ 0.34
USP3-221ENST00000561442 SCYL3Q8IZE3 742 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 STK11IPQ8N1F8 1099 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 SLC44A5Q8NCS7 719 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 NACAP1Q9BZK3 213 aa17.15■□□□□ 0.34
USP3-221ENST00000561442 ARPP21Q9UBL0 812 aaPredicted RBP17.15■□□□□ 0.34
USP3-221ENST00000561442 AK9Q5TCS8 1911 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 SPDYE5A6NIY4 337 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 CHMLP26374 656 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 SHMT1P34896 483 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 MAP2K2P36507 400 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 ERO1BQ86YB8 467 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 JMYQ8N9B5 988 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 NAPBQ9H115 298 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 NAV1Q8NEY1 1877 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 CDK5RAP2Q96SN8 1893 aa17.14■□□□□ 0.33
USP3-221ENST00000561442 DDX60LQ5H9U9 1706 aaKnown RBP17.13■□□□□ 0.33
USP3-221ENST00000561442 FOCADQ5VW36 1801 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 CAP2P40123 477 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 JAG1P78504 1218 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 GABPAQ06546 454 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 BMP2KLQ5H9B9 411 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 IL25Q9H293 177 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 OTOFQ9HC10 1997 aa17.13■□□□□ 0.33
USP3-221ENST00000561442 SIPA1L1O43166 1804 aa17.12■□□□□ 0.33
USP3-221ENST00000561442 ZBTB48P10074 688 aaPredicted RBP17.12■□□□□ 0.33
USP3-221ENST00000561442 HSPD1P10809 573 aaKnown RBP17.12■□□□□ 0.33
USP3-221ENST00000561442 PTPRAP18433 802 aa17.12■□□□□ 0.33
USP3-221ENST00000561442 MFAP1P55081 439 aaKnown RBP17.12■□□□□ 0.33
USP3-221ENST00000561442 PPIL2Q13356 520 aa17.12■□□□□ 0.33
USP3-221ENST00000561442 CERKLQ49MI3 558 aaPredicted RBP17.12■□□□□ 0.33
USP3-221ENST00000561442 SBK1Q52WX2 424 aa17.12■□□□□ 0.33
USP3-221ENST00000561442 TATDN1Q6P1N9 297 aa17.12■□□□□ 0.33
USP3-221ENST00000561442 ZHX2Q9Y6X8 837 aa17.12■□□□□ 0.33
USP3-221ENST00000561442 IRF6O14896 467 aa17.11■□□□□ 0.33
USP3-221ENST00000561442 GH2P01242 217 aa17.11■□□□□ 0.33
USP3-221ENST00000561442 CDK8P49336 464 aa17.11■□□□□ 0.33
USP3-221ENST00000561442 PPATQ06203 517 aa17.11■□□□□ 0.33
USP3-221ENST00000561442 SWAP70Q9UH65 585 aa17.11■□□□□ 0.33
USP3-221ENST00000561442 MANSC4A6NHS7 340 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms