RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 FBXO3Q9UK99 471 aa25.25■■□□□ 1.63
SQSTM1-215ENST00000514093 MROH7-TTC4A0A0A0MT08 1334 aa25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 ZNF521Q96K83 1311 aa25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 ANP32CO43423 234 aa25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 UBTFL1P0CB47 393 aaPredicted RBP25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 GCLCP48506 637 aaPredicted RBP25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 RHBDL3P58872 404 aa25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 RRP1BQ14684 758 aaKnown RBP25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 ZNF280CQ8ND82 737 aa25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 ASCC2Q9H1I8 757 aaPredicted RBP25.24■■□□□ 1.63
SQSTM1-215ENST00000514093 TBC1D12O60347 775 aa25.23■■□□□ 1.63
SQSTM1-215ENST00000514093 MECOMQ03112 1051 aa25.23■■□□□ 1.63
SQSTM1-215ENST00000514093 GPR153Q6NV75 609 aa25.23■■□□□ 1.63
SQSTM1-215ENST00000514093 GPR75-ASB3A0A0A6YYF3 556 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 PEX10O60683 326 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 CYP2B6P20813 491 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 LRIT3Q3SXY7 679 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 SPTY2D1Q68D10 685 aaPredicted RBP25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 TDHQ8IZJ6 230 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 ZNF384Q8TF68 577 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 TRIB2Q92519 343 aa25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 OSBPL5Q9H0X9 879 aaPredicted RBP25.22■■□□□ 1.63
SQSTM1-215ENST00000514093 DDX60LQ5H9U9 1706 aaKnown RBP25.21■■□□□ 1.63
SQSTM1-215ENST00000514093 PABPC4Q13310 644 aaKnown RBP eCLIP25.21■■□□□ 1.63
SQSTM1-215ENST00000514093 UBE2OQ9C0C9 1292 aaKnown RBP25.21■■□□□ 1.63
SQSTM1-215ENST00000514093 MTMR10Q9NXD2 777 aa25.21■■□□□ 1.63
SQSTM1-215ENST00000514093 OGDHLQ9ULD0 1010 aa25.21■■□□□ 1.63
SQSTM1-215ENST00000514093 STXBP5LQ9Y2K9 1186 aa25.21■■□□□ 1.63
SQSTM1-215ENST00000514093 CUL9Q8IWT3 2517 aa25.2■■□□□ 1.62
SQSTM1-215ENST00000514093 ERICH6Q7L0X2 663 aa25.2■■□□□ 1.62
SQSTM1-215ENST00000514093 CAP2P40123 477 aa25.19■■□□□ 1.62
SQSTM1-215ENST00000514093 XAGE2Q96GT9 111 aa25.19■■□□□ 1.62
SQSTM1-215ENST00000514093 LOC285556D6RIA3 1793 aa25.18■■□□□ 1.62
SQSTM1-215ENST00000514093 PFASO15067 1338 aa25.18■■□□□ 1.62
SQSTM1-215ENST00000514093 USP17L5A8MUK1 530 aa25.18■■□□□ 1.62
SQSTM1-215ENST00000514093 ZBTB22O15209 634 aa25.18■■□□□ 1.62
SQSTM1-215ENST00000514093 PRKAR2AP13861 404 aaKnown RBP25.18■■□□□ 1.62
SQSTM1-215ENST00000514093 PDS5AQ29RF7 1337 aaKnown RBP25.17■■□□□ 1.62
SQSTM1-215ENST00000514093 PLXNB2O15031 1838 aa25.17■■□□□ 1.62
SQSTM1-215ENST00000514093 A0A1B0GUL7 405 aa25.17■■□□□ 1.62
SQSTM1-215ENST00000514093 TBC1D9Q6ZT07 1266 aa25.17■■□□□ 1.62
SQSTM1-215ENST00000514093 COPRSQ9NQ92 184 aa25.17■■□□□ 1.62
SQSTM1-215ENST00000514093 NPM3O75607 178 aaKnown RBP25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 TFCP2Q12800 502 aa25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 SH3D19Q5HYK7 790 aa25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 MAP3K21Q5TCX8 1036 aa25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 PI16Q6UXB8 463 aa25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 P2RX7Q99572 595 aaKnown RBP25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 SMC4Q9NTJ3 1288 aa25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 MORF4L1Q9UBU8 362 aa25.16■■□□□ 1.62
SQSTM1-215ENST00000514093 IRX3P78415 501 aaPredicted RBP25.15■■□□□ 1.62
SQSTM1-215ENST00000514093 MTMR2Q13614 643 aa25.15■■□□□ 1.62
SQSTM1-215ENST00000514093 NSUN4Q96CB9 384 aaKnown RBP25.15■■□□□ 1.62
SQSTM1-215ENST00000514093 TBC1D2Q9BYX2 928 aa25.15■■□□□ 1.62
SQSTM1-215ENST00000514093 TXNRD2Q9NNW7 524 aa25.15■■□□□ 1.62
SQSTM1-215ENST00000514093 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.15■■□□□ 1.62
SQSTM1-215ENST00000514093 ATAD5Q96QE3 1844 aa25.14■■□□□ 1.62
SQSTM1-215ENST00000514093 NEUROD6Q96NK8 337 aa25.14■■□□□ 1.62
SQSTM1-215ENST00000514093 NUDT12Q9BQG2 462 aa25.14■■□□□ 1.62
SQSTM1-215ENST00000514093 AS3MTQ9HBK9 375 aa25.14■■□□□ 1.62
SQSTM1-215ENST00000514093 HMG20BQ9P0W2 317 aa25.14■■□□□ 1.62
SQSTM1-215ENST00000514093 E9PSI1 815 aa25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 LDHCP07864 332 aa25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 JAG1P78504 1218 aa25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 MDM2Q00987 491 aaPredicted RBP25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 CACNB2Q08289 660 aaPredicted RBP25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 MVPQ14764 893 aaKnown RBP25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 TEX11Q8IYF3 940 aa25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 RAI14Q9P0K7 980 aa25.13■■□□□ 1.61
SQSTM1-215ENST00000514093 CCND3P30281 292 aaPredicted RBP25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 BACE1P56817 501 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 GSTO1P78417 241 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 LRRC26Q2I0M4 334 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 ALDH1L2Q3SY69 923 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 GPRC5AQ8NFJ5 357 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 MEIS3Q99687 375 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 TMOD4Q9NZQ9 345 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 AKAP2Q9Y2D5 859 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 UNC80Q8N2C7 3258 aa25.12■■□□□ 1.61
SQSTM1-215ENST00000514093 COL6A1P12109 1028 aa25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 HERVK_113P62684 666 aa25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 CCL14Q16627 93 aa25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 SHROOM1Q2M3G4 852 aaPredicted RBP25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 Q3C1V9 767 aa25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 SPATA5Q8NB90 893 aa25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 SH3RF3Q8TEJ3 882 aaPredicted RBP25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 WDR18Q9BV38 432 aa25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 COL25A1Q9BXS0 654 aaPredicted RBP25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 NOB1Q9ULX3 412 aaKnown RBP25.11■■□□□ 1.61
SQSTM1-215ENST00000514093 XRCC5P13010 732 aaKnown RBP25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 ZKSCAN1P17029 563 aaPredicted RBP25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 HOXA7P31268 230 aaPredicted RBP25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 SLFN5Q08AF3 891 aa25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 LHX8Q68G74 356 aa25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 RBPJLQ9UBG7 517 aa25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 HERC5Q9UII4 1024 aaKnown RBP25.1■■□□□ 1.61
SQSTM1-215ENST00000514093 COL2A1P02458 1487 aaPredicted RBP25.09■■□□□ 1.61
SQSTM1-215ENST00000514093 MAP4K4O95819 1239 aaPredicted RBP25.09■■□□□ 1.61
SQSTM1-215ENST00000514093 PDE3AQ14432 1141 aa25.09■■□□□ 1.61
SQSTM1-215ENST00000514093 SOCS4Q8WXH5 440 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms