RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 EHD4Q9H223 541 aa23.7■■□□□ 1.38
COL9A3-204ENST00000463487 PATL2C9JE40 543 aaKnown RBP23.69■■□□□ 1.38
COL9A3-204ENST00000463487 TDO2P48775 406 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 NOGQ13253 232 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 BMP2KLQ5H9B9 411 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 CYP4F22Q6NT55 531 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 FAM227BQ96M60 508 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 SERPINB13Q9UIV8 391 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 ZNF112Q9UJU3 913 aa23.69■■□□□ 1.38
COL9A3-204ENST00000463487 WDR33Q9C0J8 1336 aaKnown RBP23.68■■□□□ 1.38
COL9A3-204ENST00000463487 A0A0D9SFI3 127 aa23.68■■□□□ 1.38
COL9A3-204ENST00000463487 SLC10A3P09131 477 aa23.68■■□□□ 1.38
COL9A3-204ENST00000463487 VGLL4Q14135 290 aa23.68■■□□□ 1.38
COL9A3-204ENST00000463487 CWC27Q6UX04 472 aaKnown RBP23.68■■□□□ 1.38
COL9A3-204ENST00000463487 DDX60LQ5H9U9 1706 aaKnown RBP23.67■■□□□ 1.38
COL9A3-204ENST00000463487 CCDC171Q6TFL3 1326 aa23.67■■□□□ 1.38
COL9A3-204ENST00000463487 GSG1L2A8MUP6 293 aa23.67■■□□□ 1.38
COL9A3-204ENST00000463487 VEGFBP49765 207 aa23.67■■□□□ 1.38
COL9A3-204ENST00000463487 SLC4A8Q2Y0W8 1093 aa23.67■■□□□ 1.38
COL9A3-204ENST00000463487 METTL16Q86W50 562 aaKnown RBP23.67■■□□□ 1.38
COL9A3-204ENST00000463487 RASAL3Q86YV0 1011 aa23.67■■□□□ 1.38
COL9A3-204ENST00000463487 PICK1Q9NRD5 415 aa23.67■■□□□ 1.38
COL9A3-204ENST00000463487 USP17L12C9JPN9 530 aa23.66■■□□□ 1.38
COL9A3-204ENST00000463487 USP17L21D6R901 530 aa23.66■■□□□ 1.38
COL9A3-204ENST00000463487 CTNND1O60716 968 aaKnown RBP23.66■■□□□ 1.38
COL9A3-204ENST00000463487 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.66■■□□□ 1.38
COL9A3-204ENST00000463487 NAPBQ9H115 298 aa23.66■■□□□ 1.38
COL9A3-204ENST00000463487 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.66■■□□□ 1.38
COL9A3-204ENST00000463487 SWAP70Q9UH65 585 aa23.66■■□□□ 1.38
COL9A3-204ENST00000463487 OTOFQ9HC10 1997 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 RAD50Q92878 1312 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 ZBTB48P10074 688 aaPredicted RBP23.65■■□□□ 1.38
COL9A3-204ENST00000463487 MAP2K2P36507 400 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 NOL9Q5SY16 702 aaKnown RBP23.65■■□□□ 1.38
COL9A3-204ENST00000463487 CASC1Q6TDU7 716 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 CCDC129Q6ZRS4 1044 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 IFNL3Q8IZI9 196 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 DNAJC5GQ8N7S2 189 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 ZKSCAN4Q969J2 545 aaPredicted RBP23.65■■□□□ 1.38
COL9A3-204ENST00000463487 CLMNQ96JQ2 1002 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 ELP3Q9H9T3 547 aa23.65■■□□□ 1.38
COL9A3-204ENST00000463487 INPP5BP32019 993 aa23.64■■□□□ 1.37
COL9A3-204ENST00000463487 PLCD1P51178 756 aa23.64■■□□□ 1.37
COL9A3-204ENST00000463487 SBK1Q52WX2 424 aa23.64■■□□□ 1.37
COL9A3-204ENST00000463487 ERO1BQ86YB8 467 aa23.64■■□□□ 1.37
COL9A3-204ENST00000463487 REM2Q8IYK8 340 aaPredicted RBP23.64■■□□□ 1.37
COL9A3-204ENST00000463487 SCYL3Q8IZE3 742 aa23.64■■□□□ 1.37
COL9A3-204ENST00000463487 ZNF287Q9HBT7 754 aa23.64■■□□□ 1.37
COL9A3-204ENST00000463487 BAZ2AQ9UIF9 1905 aaKnown RBP23.63■■□□□ 1.37
COL9A3-204ENST00000463487 FAM196BA6NMK8 535 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 PHF20L1A8MW92 1017 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 SLC3A2P08195 630 aaKnown RBP23.63■■□□□ 1.37
COL9A3-204ENST00000463487 CHMLP26374 656 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 C12orf60Q5U649 245 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 CTR9Q6PD62 1173 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 SKAP1Q86WV1 359 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 GINM1Q9NU53 330 aa23.63■■□□□ 1.37
COL9A3-204ENST00000463487 SPDYE5A6NIY4 337 aa23.62■■□□□ 1.37
COL9A3-204ENST00000463487 FAM155AB1AL88 458 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-204ENST00000463487 SPRYD7Q5W111 196 aa23.62■■□□□ 1.37
COL9A3-204ENST00000463487 OPTNQ96CV9 577 aa23.62■■□□□ 1.37
COL9A3-204ENST00000463487 WNK4Q96J92 1243 aa23.62■■□□□ 1.37
COL9A3-204ENST00000463487 EPB41L4AQ9HCS5 686 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-204ENST00000463487 SNCAIPQ9Y6H5 919 aa23.62■■□□□ 1.37
COL9A3-204ENST00000463487 SIPA1L1O43166 1804 aa23.61■■□□□ 1.37
COL9A3-204ENST00000463487 MINDY4BA8MYZ0 360 aa23.61■■□□□ 1.37
COL9A3-204ENST00000463487 ASNSP08243 561 aa23.61■■□□□ 1.37
COL9A3-204ENST00000463487 CAP2P40123 477 aa23.61■■□□□ 1.37
COL9A3-204ENST00000463487 PPATQ06203 517 aa23.61■■□□□ 1.37
COL9A3-204ENST00000463487 ZNF589Q86UQ0 364 aaPredicted RBP23.61■■□□□ 1.37
COL9A3-204ENST00000463487 TBC1D2Q9BYX2 928 aa23.61■■□□□ 1.37
COL9A3-204ENST00000463487 CYP2D6P10635 497 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 HSPD1P10809 573 aaKnown RBP23.6■■□□□ 1.37
COL9A3-204ENST00000463487 SREBF2Q12772 1141 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 ALX1Q15699 326 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 CERKLQ49MI3 558 aaPredicted RBP23.6■■□□□ 1.37
COL9A3-204ENST00000463487 TATDN1Q6P1N9 297 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 OTUD5Q96G74 571 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 DNAJC18Q9H819 358 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 DOCK1Q14185 1865 aa23.6■■□□□ 1.37
COL9A3-204ENST00000463487 ZMYM6O95789 1325 aa23.59■■□□□ 1.37
COL9A3-204ENST00000463487 MANSC4A6NHS7 340 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-204ENST00000463487 MAP2K1Q02750 393 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-204ENST00000463487 GABPAQ06546 454 aa23.59■■□□□ 1.37
COL9A3-204ENST00000463487 PPIL2Q13356 520 aa23.59■■□□□ 1.37
COL9A3-204ENST00000463487 CABP5Q9NP86 173 aa23.59■■□□□ 1.37
COL9A3-204ENST00000463487 LAMB1P07942 1786 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 ROBO3Q96MS0 1386 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 INHBEP58166 350 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 VPS53Q5VIR6 699 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 C16orf86Q6ZW13 317 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 CCDC17Q96LX7 622 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 BEGAINQ9BUH8 593 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 DSCC1Q9BVC3 393 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 AS3MTQ9HBK9 375 aa23.58■■□□□ 1.37
COL9A3-204ENST00000463487 THSD7BQ9C0I4 1608 aa23.58■■□□□ 1.36
COL9A3-204ENST00000463487 CYP2D7A0A087X1C5 515 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 AOC2O75106 756 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 CDC45O75419 566 aa23.57■■□□□ 1.36
COL9A3-204ENST00000463487 SLURP2P0DP57 97 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms