RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 AIDAQ96BJ3 306 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 AK7Q96M32 723 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 FOXP1Q9H334 677 aaPredicted RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 PCDHA5Q9Y5H7 936 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 PARP3Q9Y6F1 533 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 ARAP2Q8WZ64 1704 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 STRCQ7RTU9 1775 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 MYH3P11055 1940 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 RANBP6O60518 1105 aaKnown RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 TADA3O75528 432 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 URI1O94763 535 aaPredicted RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 RILPL1Q5EBL4 403 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 ANKRD36CQ5JPF3 1778 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 SPECC1Q5M775 1068 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 AEBP2Q6ZN18 517 aaPredicted RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 MROH5Q6ZUA9 1318 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 MICU3Q86XE3 530 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 TIAM2Q8IVF5 1701 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 IFNL3Q8IZI9 196 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 ENOX1Q8TC92 643 aaKnown RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 CCDC85AQ96PX6 553 aaPredicted RBP11.23□□□□□ -0.61
CD44-206ENST00000415148 WDR24Q96S15 920 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 FANCLQ9NW38 375 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 ZSWIM5Q9P217 1185 aa11.23□□□□□ -0.61
CD44-206ENST00000415148 TOGARAM1Q9Y4F4 1720 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 VWA3AA6NCI4 1184 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 ATP8B1O43520 1251 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 STX10O60499 249 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 MMP1P03956 469 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 CAPN2P17655 700 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 GNAT2P19087 354 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 FGFR2P21802 821 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 PTPREP23469 700 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 SARSP49591 514 aaKnown RBP11.22□□□□□ -0.61
CD44-206ENST00000415148 ST5P78524 1137 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 PUM3Q15397 648 aaKnown RBP11.22□□□□□ -0.61
CD44-206ENST00000415148 DNAJC10Q8IXB1 793 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 NEK11Q8NG66 645 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 MPHOSPH8Q99549 860 aa11.22□□□□□ -0.61
CD44-206ENST00000415148 A0A0U1RQJ8 604 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 CCDC196A0A1B0GTZ2 297 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 VGLL3A8MV65 326 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 IRS4O14654 1257 aaPredicted RBP11.21□□□□□ -0.61
CD44-206ENST00000415148 IFIT3O14879 490 aaKnown RBP11.21□□□□□ -0.61
CD44-206ENST00000415148 CYP2C19P33261 490 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 HSPA2P54652 639 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 HNRNPH2P55795 449 aaKnown RBP11.21□□□□□ -0.61
CD44-206ENST00000415148 MAP3K12Q12852 859 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 AKNAD1Q5T1N1 836 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 TRIM22Q8IYM9 498 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 ATRIPQ8WXE1 791 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 BBXQ8WY36 941 aaPredicted RBP11.21□□□□□ -0.61
CD44-206ENST00000415148 INCENPQ9NQS7 918 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 ARGLU1Q9NWB6 273 aaPredicted RBP11.21□□□□□ -0.61
CD44-206ENST00000415148 CEP131Q9UPN4 1083 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 DOCK2Q92608 1830 aa11.21□□□□□ -0.61
CD44-206ENST00000415148 EFCAB8A8MWE9 144 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 ERVV-1B6SEH8 477 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 PHKA1P46020 1223 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 GYS2P54840 703 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 MAPK8IP2Q13387 824 aaPredicted RBP11.21□□□□□ -0.62
CD44-206ENST00000415148 SART3Q15020 963 aaKnown RBP11.21□□□□□ -0.62
CD44-206ENST00000415148 POSTNQ15063 836 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 PPP2R5BQ15173 497 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 TOGARAM2Q6ZUX3 1019 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 STK11IPQ8N1F8 1099 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 UBXN4Q92575 508 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 SLC26A6Q9BXS9 759 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 NAPBQ9H115 298 aa11.21□□□□□ -0.62
CD44-206ENST00000415148 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.21□□□□□ -0.62
CD44-206ENST00000415148 DEXIO95424 95 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 ZNF18P17022 549 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 GRIN1Q05586 938 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 MORC3Q14149 939 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 HLFQ16534 295 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 MFSD6Q6ZSS7 791 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 SPATA5Q8NB90 893 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 STAG1Q8WVM7 1258 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 FBXO2Q9UK22 296 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 MAN1B1Q9UKM7 699 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 WWC3Q9ULE0 1092 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 ZNF330Q9Y3S2 320 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 SRPRBQ9Y5M8 271 aaKnown RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 LRP5O75197 1615 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 SOS2Q07890 1332 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 PNPLA7Q6ZV29 1317 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 TBC1D8O95759 1140 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 ERCC5P28715 1186 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 TOB1P50616 345 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 ZNF827Q17R98 1081 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 BRINP3Q76B58 766 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 NUTM2AQ8IVF1 878 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 PIGBQ92521 554 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 CCDC34Q96HJ3 373 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 BAG1Q99933 345 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 MYL10Q9BUA6 226 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 IRX2Q9BZI1 471 aaPredicted RBP11.2□□□□□ -0.62
CD44-206ENST00000415148 NACAP1Q9BZK3 213 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 SEC31BQ9NQW1 1179 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 TRMT112Q9UI30 125 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms