RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 RIOK1Q9BRS2 568 aaKnown RBP25.52■■□□□ 1.68
UPF3A-201ENST00000351487 ERFEQ4G0M1 354 aa25.52■■□□□ 1.68
UPF3A-201ENST00000351487 FILIP1Q7Z7B0 1213 aa25.52■■□□□ 1.68
UPF3A-201ENST00000351487 DIS3L2Q8IYB7 885 aaKnown RBP25.52■■□□□ 1.68
UPF3A-201ENST00000351487 ELOA2Q8IYF1 753 aaPredicted RBP25.52■■□□□ 1.68
UPF3A-201ENST00000351487 MYH2Q9UKX2 1941 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 SKILP12757 684 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 GYG1P46976 350 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 PPP2R5BQ15173 497 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 SEC23AQ15436 765 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 FANCBQ8NB91 859 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 UBE2Q2Q8WVN8 375 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 UBAC1Q9BSL1 405 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 BAZ2AQ9UIF9 1905 aaKnown RBP25.51■■□□□ 1.67
UPF3A-201ENST00000351487 BTBD18B2RXH4 712 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 CTIFO43310 598 aaKnown RBP25.51■■□□□ 1.67
UPF3A-201ENST00000351487 GLIPR1L2Q4G1C9 344 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 ZNF710Q8N1W2 664 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 KRI1Q8N9T8 703 aaKnown RBP25.51■■□□□ 1.67
UPF3A-201ENST00000351487 SDR42E1Q8WUS8 393 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 ESR2Q92731 530 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 CLIC6Q96NY7 704 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 KCND1Q9NSA2 647 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 RAI14Q9P0K7 980 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 ABCF2Q9UG63 623 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 IQSEC3Q9UPP2 1182 aaPredicted RBP25.51■■□□□ 1.67
UPF3A-201ENST00000351487 MYH13Q9UKX3 1938 aa25.51■■□□□ 1.67
UPF3A-201ENST00000351487 TNNT1P13805 278 aa25.5■■□□□ 1.67
UPF3A-201ENST00000351487 RILPL1Q5EBL4 403 aa25.5■■□□□ 1.67
UPF3A-201ENST00000351487 C3orf67Q6ZVT6 689 aa25.5■■□□□ 1.67
UPF3A-201ENST00000351487 XPO4Q9C0E2 1151 aaKnown RBP25.5■■□□□ 1.67
UPF3A-201ENST00000351487 TOB1P50616 345 aaPredicted RBP25.49■■□□□ 1.67
UPF3A-201ENST00000351487 KCNH3Q9ULD8 1083 aa25.49■■□□□ 1.67
UPF3A-201ENST00000351487 KCNQ2O43526 872 aa25.49■■□□□ 1.67
UPF3A-201ENST00000351487 KRBA2Q6ZNG9 492 aa25.49■■□□□ 1.67
UPF3A-201ENST00000351487 STK11IPQ8N1F8 1099 aa25.49■■□□□ 1.67
UPF3A-201ENST00000351487 TSC1Q92574 1164 aa25.49■■□□□ 1.67
UPF3A-201ENST00000351487 TNKSO95271 1327 aa25.49■■□□□ 1.67
UPF3A-201ENST00000351487 COL24A1Q17RW2 1714 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 DHX8Q14562 1220 aaKnown RBP25.48■■□□□ 1.67
UPF3A-201ENST00000351487 TPD52L1Q16890 204 aaPredicted RBP25.48■■□□□ 1.67
UPF3A-201ENST00000351487 CAVIN4Q5BKX8 364 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 METTL16Q86W50 562 aaKnown RBP25.48■■□□□ 1.67
UPF3A-201ENST00000351487 LINC00116Q8NCU8 138 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 BRIP1Q9BX63 1249 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 BCL2L12Q9HB09 334 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 IFNKQ9P0W0 207 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 TAOK2Q9UL54 1235 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 KCNJ14Q9UNX9 436 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 PAXBP1Q9Y5B6 917 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 RNF26Q9BY78 433 aaPredicted RBP25.48■■□□□ 1.67
UPF3A-201ENST00000351487 MINPP1Q9UNW1 487 aa25.48■■□□□ 1.67
UPF3A-201ENST00000351487 PNOCQ13519 176 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 SLC10A5Q5PT55 438 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 HSD3B7Q9H2F3 369 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 LTBP4Q8N2S1 1624 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 CNTNAP4Q9C0A0 1308 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 MINDY4BA8MYZ0 360 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 SMC2O95347 1197 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 PCP11498 1178 aaKnown RBP25.47■■□□□ 1.67
UPF3A-201ENST00000351487 PTPREP23469 700 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 CCDC150Q8NCX0 1101 aa25.47■■□□□ 1.67
UPF3A-201ENST00000351487 FBXO2Q9UK22 296 aaPredicted RBP25.47■■□□□ 1.67
UPF3A-201ENST00000351487 LAMB1P07942 1786 aa25.46■■□□□ 1.67
UPF3A-201ENST00000351487 SEMA3EO15041 775 aa25.46■■□□□ 1.67
UPF3A-201ENST00000351487 FGRP09769 529 aa25.46■■□□□ 1.67
UPF3A-201ENST00000351487 LONRF3Q496Y0 759 aa25.46■■□□□ 1.67
UPF3A-201ENST00000351487 NYAP1Q6ZVC0 841 aa25.46■■□□□ 1.67
UPF3A-201ENST00000351487 MAST2Q6P0Q8 1798 aa25.45■■□□□ 1.67
UPF3A-201ENST00000351487 CNNM3Q8NE01 707 aa25.45■■□□□ 1.67
UPF3A-201ENST00000351487 NUP133Q8WUM0 1156 aa25.45■■□□□ 1.67
UPF3A-201ENST00000351487 FAM84BQ96KN1 310 aaPredicted RBP25.45■■□□□ 1.67
UPF3A-201ENST00000351487 MORC2Q9Y6X9 1032 aaPredicted RBP25.45■■□□□ 1.67
UPF3A-201ENST00000351487 PDS5AQ29RF7 1337 aaKnown RBP25.45■■□□□ 1.67
UPF3A-201ENST00000351487 MYL5Q02045 173 aa25.45■■□□□ 1.66
UPF3A-201ENST00000351487 ZNF579Q8NAF0 562 aaKnown RBP25.45■■□□□ 1.66
UPF3A-201ENST00000351487 MYO1BO43795 1136 aa25.44■■□□□ 1.66
UPF3A-201ENST00000351487 WTIPA6NIX2 430 aaPredicted RBP25.44■■□□□ 1.66
UPF3A-201ENST00000351487 USP27XA6NNY8 438 aa25.44■■□□□ 1.66
UPF3A-201ENST00000351487 FANCCQ00597 558 aa25.44■■□□□ 1.66
UPF3A-201ENST00000351487 CMTR1Q8N1G2 835 aaKnown RBP25.44■■□□□ 1.66
UPF3A-201ENST00000351487 ENAHQ8N8S7 591 aaPredicted RBP25.44■■□□□ 1.66
UPF3A-201ENST00000351487 ZNF384Q8TF68 577 aa25.44■■□□□ 1.66
UPF3A-201ENST00000351487 ZSCAN10Q96SZ4 725 aaPredicted RBP25.44■■□□□ 1.66
UPF3A-201ENST00000351487 LMOD1P29536 600 aaPredicted RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 MDM2Q00987 491 aaPredicted RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 NR5A1Q13285 461 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 FBXO33Q7Z6M2 555 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 FOXP4Q8IVH2 680 aaPredicted RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 CCDC82Q8N4S0 544 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 CELF1Q92879 486 aaKnown RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 HOOK1Q9UJC3 728 aaKnown RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 KCNJ6P48051 423 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 ISM2Q6H9L7 571 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 TMC6Q7Z403 805 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 CCAR2Q8N163 923 aaKnown RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 NOL10Q9BSC4 688 aaKnown RBP25.43■■□□□ 1.66
UPF3A-201ENST00000351487 CEP131Q9UPN4 1083 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 PCDHA5Q9Y5H7 936 aa25.43■■□□□ 1.66
UPF3A-201ENST00000351487 DYNLL1P63167 89 aaKnown RBP25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms