RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 TRAV10A0A0B4J240 114 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 FAM236DA0A1B0GTK5 79 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 A0A1B0GVX0 72 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 M0R2N4 97 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 BPY2O14599 106 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 FAM236CP0DP71 79 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 DEFB130BP0DP73 79 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 DEFB130AP0DP74 79 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 ATP5EP56381 51 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 C9orf116Q5BN46 136 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 C1orf195Q5TG92 126 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 UNQ6190/PRO20217Q6UXQ8 127 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 C20orf197Q8N268 126 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 WFDC9Q8NEX5 89 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 WFDC11Q8NEX6 87 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 C8orf17Q9NRJ1 99 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 LAMTOR3Q9UHA4 124 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 ZNF706Q9Y5V0 76 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 HIVEP3Q5T1R4 2406 aa2.36□□□□□ -2.03
SMCHD1-208ENST00000583344 M0R378 163 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 ANGP03950 147 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 TLX1NBP0CAT3 122 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 COX7BP24311 80 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 MP68P56378 58 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 ELOF1P60002 83 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 DAD1P61803 113 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 HAMPP81172 84 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 LELP1Q5T871 98 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 Q6ZQY7 126 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 DIRC1Q969H9 104 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 WFDC10AQ9H1F0 79 aa2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 C11orf68Q9H3H3 251 aaKnown RBP2.35□□□□□ -2.03
SMCHD1-208ENST00000583344 NBEAL1Q6ZS30 2694 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 H3BNG1 76 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 MIFP14174 115 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 SPAG11BQ08648 103 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 SYCNQ0VAF6 134 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 KRTAP26-1Q6PEX3 210 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 C6orf48Q9UBA6 75 aa2.34□□□□□ -2.03
SMCHD1-208ENST00000583344 SORL1Q92673 2214 aa2.34□□□□□ -2.04
SMCHD1-208ENST00000583344 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.33□□□□□ -2.045e-7■■■■■ 30.4
SMCHD1-208ENST00000583344 IGLV10-54A0A075B6I4 117 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 IGLV5-48A0A075B6I7 105 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 A0A096LPF7 62 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 SPRR5A0A1B0GTR4 108 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 ZNF73O43830 326 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 SPART-AS1P0CW21 52 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 HRCT1Q6UXD1 115 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 FP248Q71RG6 208 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 C15orf56Q8N910 161 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 RMI2Q96E14 147 aa2.33□□□□□ -2.04
SMCHD1-208ENST00000583344 LCE6AA0A183 80 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 F8WEM9 126 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 NREPQ16612 68 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 LUZP6Q538Z0 58 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 CLPSL2Q6UWE3 100 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 Q8NAQ8 132 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 TMEM254Q8TBM7 123 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 TM2D3Q9BRN9 247 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 KCNQ1DNQ9H478 68 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 FN1P02751 2386 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 FLNAP21333 2647 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 ATRQ13535 2644 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 MXRA5Q9NR99 2828 aa2.32□□□□□ -2.04
SMCHD1-208ENST00000583344 IGKV4-1P06312 121 aa2.31□□□□□ -2.04
SMCHD1-208ENST00000583344 SNURFQ9Y675 71 aa2.31□□□□□ -2.04
SMCHD1-208ENST00000583344 NSD1Q96L73 2696 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-208ENST00000583344 STAB1Q9NY15 2570 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 SPRR1AP35321 89 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 DEFB116Q30KQ4 102 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 Q6ZRU5 148 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 CIRBP-AS1Q8TBR5 109 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 SPRR4Q96PI1 79 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 XAGE1AQ9HD64 81 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 COL6A5A8TX70 2615 aa2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 MAP1AP78559 2803 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-208ENST00000583344 ACANP16112 2415 aa2.29□□□□□ -2.04
SMCHD1-208ENST00000583344 DEFB135Q30KP9 77 aa2.29□□□□□ -2.04
SMCHD1-208ENST00000583344 ZCCHC13Q8WW36 166 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-208ENST00000583344 JMJD1CQ15652 2540 aa2.29□□□□□ -2.04
SMCHD1-208ENST00000583344 MEGF8Q7Z7M0 2845 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 AKAP6Q13023 2319 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 CSPG4Q6UVK1 2322 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 A0A1W2PNM2 257 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 DEFB4AO15263 64 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 PMAIP1Q13794 54 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 Q1T7F1 81 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 ESRGQ1W209 222 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 KPRPQ5T749 579 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 SCXQ7RTU7 201 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 CYP4F30PQ9H0H9 118 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 LINC00474Q9P2X8 69 aa2.28□□□□□ -2.04
SMCHD1-208ENST00000583344 ANK3Q12955 4377 aaKnown RBP2.28□□□□□ -2.05
SMCHD1-208ENST00000583344 ETDCA0A1B0GVM5 59 aa2.27□□□□□ -2.05
SMCHD1-208ENST00000583344 hDV103S1A0JD37 113 aa2.27□□□□□ -2.05
SMCHD1-208ENST00000583344 K7ERS5 55 aa2.27□□□□□ -2.05
SMCHD1-208ENST00000583344 FUSP35637 526 aaKnown RBP eCLIP2.27□□□□□ -2.05
SMCHD1-208ENST00000583344 LINC01556Q5JQF7 62 aa2.27□□□□□ -2.05
SMCHD1-208ENST00000583344 Q6ZRX8 168 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms