RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 Q8NBF4 154 aa9.05□□□□□ -0.96
GTF3C1-203ENST00000562609 COL7A1Q02388 2944 aa9.04□□□□□ -0.96
GTF3C1-203ENST00000562609 CAMK2N2Q96S95 79 aa9.04□□□□□ -0.96
GTF3C1-203ENST00000562609 DEFB131BA0A096LNP1 70 aa9.04□□□□□ -0.96
GTF3C1-203ENST00000562609 WFDC13Q8IUB5 93 aa9.04□□□□□ -0.96
GTF3C1-203ENST00000562609 C4orf48Q5BLP8 95 aa9.03□□□□□ -0.96
GTF3C1-203ENST00000562609 Q75L30 129 aa9.03□□□□□ -0.96
GTF3C1-203ENST00000562609 KCNQ1DNQ9H478 68 aa9.03□□□□□ -0.96
GTF3C1-203ENST00000562609 PRR34Q9NV39 138 aa9.02□□□□□ -0.97
GTF3C1-203ENST00000562609 HUWE1Q7Z6Z7 4374 aaKnown RBP9.01□□□□□ -0.97
GTF3C1-203ENST00000562609 LYSTQ99698 3801 aa9.01□□□□□ -0.97
GTF3C1-203ENST00000562609 C7orf65Q6ZTY9 151 aa9□□□□□ -0.97
GTF3C1-203ENST00000562609 SPRR4Q96PI1 79 aa9□□□□□ -0.97
GTF3C1-203ENST00000562609 Q9BRP9 147 aa9□□□□□ -0.97
GTF3C1-203ENST00000562609 SPANXA2-OT1Q8N9U9 137 aa8.99□□□□□ -0.97
GTF3C1-203ENST00000562609 TENM2Q9NT68 2774 aa8.99□□□□□ -0.97
GTF3C1-203ENST00000562609 TNP2Q05952 138 aa8.99□□□□□ -0.97
GTF3C1-203ENST00000562609 CDC42SE1Q9NRR8 79 aa8.98□□□□□ -0.97
GTF3C1-203ENST00000562609 LOC101927531A0A1B0GV80 90 aa8.97□□□□□ -0.97
GTF3C1-203ENST00000562609 K7EIL1 84 aa8.97□□□□□ -0.97
GTF3C1-203ENST00000562609 H0Y9P7 68 aa8.96□□□□□ -0.98
GTF3C1-203ENST00000562609 C7orf33Q8WU49 177 aa8.96□□□□□ -0.98
GTF3C1-203ENST00000562609 H3BNG1 76 aa8.95□□□□□ -0.98
GTF3C1-203ENST00000562609 MOBPQ13875 183 aa8.95□□□□□ -0.98
GTF3C1-203ENST00000562609 NKAPP1Q8N9T2 125 aa8.95□□□□□ -0.98
GTF3C1-203ENST00000562609 IGKV2D-24A0A075B6R9 120 aa8.94□□□□□ -0.98
GTF3C1-203ENST00000562609 COA5Q86WW8 74 aa8.94□□□□□ -0.98
GTF3C1-203ENST00000562609 DHRS4-AS1Q9P1J3 65 aa8.94□□□□□ -0.98
GTF3C1-203ENST00000562609 C8orf87E5RJ46 101 aa8.93□□□□□ -0.98
GTF3C1-203ENST00000562609 A0A0G2JQZ4 141 aa8.93□□□□□ -0.98
GTF3C1-203ENST00000562609 A0A1W2PNN7 141 aa8.93□□□□□ -0.98
GTF3C1-203ENST00000562609 Q6ZRX8 168 aa8.92□□□□□ -0.98
GTF3C1-203ENST00000562609 MDFIQ99750 246 aa8.92□□□□□ -0.98
GTF3C1-203ENST00000562609 SERTAD4-AS1Q5TG53 156 aa8.91□□□□□ -0.98
GTF3C1-203ENST00000562609 KRTAP26-1Q6PEX3 210 aa8.91□□□□□ -0.98
GTF3C1-203ENST00000562609 RPL37AP8A6NKH3 93 aa8.91□□□□□ -0.98
GTF3C1-203ENST00000562609 RPL37AP61513 92 aaKnown RBP8.9□□□□□ -0.99
GTF3C1-203ENST00000562609 C15orf56Q8N910 161 aa8.89□□□□□ -0.99
GTF3C1-203ENST00000562609 C9orf163Q8N9P6 203 aa8.89□□□□□ -0.99
GTF3C1-203ENST00000562609 H3BPC8 53 aa8.88□□□□□ -0.99
GTF3C1-203ENST00000562609 CSMD3Q7Z407 3707 aa8.88□□□□□ -0.99
GTF3C1-203ENST00000562609 LINC01556Q5JQF7 62 aa8.88□□□□□ -0.99
GTF3C1-203ENST00000562609 SPAG11AQ6PDA7 123 aa8.87□□□□□ -0.99
GTF3C1-203ENST00000562609 KRTAP29-1A8MX34 341 aaPredicted RBP8.87□□□□□ -0.99
GTF3C1-203ENST00000562609 LINC00476Q8WZB0 136 aa8.86□□□□□ -0.99
GTF3C1-203ENST00000562609 CASC10Q5T4H9 136 aa8.86□□□□□ -0.99
GTF3C1-203ENST00000562609 CASC2Q6XLA1 102 aa8.86□□□□□ -0.99
GTF3C1-203ENST00000562609 DNAH10Q8IVF4 4471 aa8.85□□□□□ -0.99
GTF3C1-203ENST00000562609 KRTAP4-16G5E9R7 235 aaPredicted RBP8.85□□□□□ -0.99
GTF3C1-203ENST00000562609 DNAH9Q9NYC9 4486 aa8.85□□□□□ -0.99
GTF3C1-203ENST00000562609 SPINK7P58062 85 aa8.84□□□□□ -0.99
GTF3C1-203ENST00000562609 A0A087WSZ3 146 aa8.84□□□□□ -0.99
GTF3C1-203ENST00000562609 LINC01558Q9Y6Z2 57 aa8.83□□□□□ -1
GTF3C1-203ENST00000562609 DNAH10OSP0CZ25 163 aa8.82□□□□□ -1
GTF3C1-203ENST00000562609 IGLV7-46A0A075B6I9 117 aa8.82□□□□□ -1
GTF3C1-203ENST00000562609 IGFL1Q6UW32 110 aa8.82□□□□□ -1
GTF3C1-203ENST00000562609 DNAH7Q8WXX0 4024 aa8.81□□□□□ -1
GTF3C1-203ENST00000562609 PRAC1Q96KF2 57 aa8.8□□□□□ -1
GTF3C1-203ENST00000562609 IGLV1-50A0A075B6I6 118 aa8.8□□□□□ -1
GTF3C1-203ENST00000562609 FAM168BA1KXE4 195 aa8.8□□□□□ -1
GTF3C1-203ENST00000562609 LINC00313P59037 77 aa8.8□□□□□ -1
GTF3C1-203ENST00000562609 DNAH1Q9P2D7 4330 aa8.8□□□□□ -1
GTF3C1-203ENST00000562609 PLAC8Q9NZF1 115 aa8.79□□□□□ -1
GTF3C1-203ENST00000562609 SPRR1AP35321 89 aa8.79□□□□□ -1
GTF3C1-203ENST00000562609 PCOTHQ58A44 107 aa8.79□□□□□ -1
GTF3C1-203ENST00000562609 H3BS24 57 aa8.78□□□□□ -1
GTF3C1-203ENST00000562609 CNBPP62633 177 aaKnown RBP8.78□□□□□ -1
GTF3C1-203ENST00000562609 KRTAP1-5Q9BYS1 174 aa8.74□□□□□ -1.01
GTF3C1-203ENST00000562609 PLECQ15149 4684 aaKnown RBP8.73□□□□□ -1.01
GTF3C1-203ENST00000562609 PRKDCP78527 4128 aaKnown RBP8.73□□□□□ -1.01
GTF3C1-203ENST00000562609 DNHD1Q96M86 4753 aa8.73□□□□□ -1.01
GTF3C1-203ENST00000562609 ADM2Q7Z4H4 148 aa8.72□□□□□ -1.01
GTF3C1-203ENST00000562609 IGLV5-37A0A075B6J1 123 aa8.72□□□□□ -1.01
GTF3C1-203ENST00000562609 A8MWP4 228 aa8.71□□□□□ -1.02
GTF3C1-203ENST00000562609 KRTAP7-1Q8IUC3 87 aa8.7□□□□□ -1.02
GTF3C1-203ENST00000562609 PLA2G2DQ9UNK4 145 aa8.7□□□□□ -1.02
GTF3C1-203ENST00000562609 MEGF8Q7Z7M0 2845 aa8.7□□□□□ -1.02
GTF3C1-203ENST00000562609 LINC01554Q52M75 96 aa8.69□□□□□ -1.02
GTF3C1-203ENST00000562609 UBE2DNLQ8IWF7 75 aa8.68□□□□□ -1.02
GTF3C1-203ENST00000562609 HRES1P13985 223 aa8.67□□□□□ -1.02
GTF3C1-203ENST00000562609 H0Y9J4 135 aa8.67□□□□□ -1.02
GTF3C1-203ENST00000562609 REG3GQ6UW15 175 aa8.67□□□□□ -1.02
GTF3C1-203ENST00000562609 TLX1NBP0CAT3 122 aa8.66□□□□□ -1.02
GTF3C1-203ENST00000562609 STARD9Q9P2P6 4700 aa8.66□□□□□ -1.02
GTF3C1-203ENST00000562609 LINC00472Q9H8W2 130 aa8.65□□□□□ -1.03
GTF3C1-203ENST00000562609 APLNQ9ULZ1 77 aa8.65□□□□□ -1.03
GTF3C1-203ENST00000562609 IGLV8-61A0A075B6I0 122 aa8.64□□□□□ -1.03
GTF3C1-203ENST00000562609 MMP24-AS1A0A0U1RRL7 71 aa8.64□□□□□ -1.03
GTF3C1-203ENST00000562609 TGP01266 2768 aa8.64□□□□□ -1.03
GTF3C1-203ENST00000562609 PRLHP81277 87 aa8.63□□□□□ -1.03
GTF3C1-203ENST00000562609 IGKV2-24A0A0C4DH68 120 aa8.62□□□□□ -1.03
GTF3C1-203ENST00000562609 SRRM2Q9UQ35 2752 aaKnown RBP8.62□□□□□ -1.03
GTF3C1-203ENST00000562609 PLA2G1BP04054 148 aaKnown RBP8.62□□□□□ -1.03
GTF3C1-203ENST00000562609 PRR26Q8N8Z3 221 aa8.59□□□□□ -1.03
GTF3C1-203ENST00000562609 DYNC2H1Q8NCM8 4307 aaKnown RBP8.59□□□□□ -1.03
GTF3C1-203ENST00000562609 A0A096LNI7 61 aa8.57□□□□□ -1.04
GTF3C1-203ENST00000562609 TP53AIP1Q9HCN2 124 aa8.56□□□□□ -1.04
GTF3C1-203ENST00000562609 KMT2AQ03164 3969 aa8.56□□□□□ -1.04
GTF3C1-203ENST00000562609 CHTF8P0CG12 524 aa8.55□□□□□ -1.04
GTF3C1-203ENST00000562609 Q6ZR54 194 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms