RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 LINC00208Q96KT6 92 aa3.36□□□□□ -1.87
TMEM260-210ENST00000556422 PRR34Q9NV39 138 aa3.36□□□□□ -1.87
TMEM260-210ENST00000556422 NDUFB1O75438 58 aa3.36□□□□□ -1.87
TMEM260-210ENST00000556422 DNAH7Q8WXX0 4024 aa3.36□□□□□ -1.87
TMEM260-210ENST00000556422 ROMO1P60602 79 aa3.36□□□□□ -1.87
TMEM260-210ENST00000556422 LINC00158P58513 81 aa3.35□□□□□ -1.87
TMEM260-210ENST00000556422 STAB2Q8WWQ8 2551 aa3.35□□□□□ -1.87
TMEM260-210ENST00000556422 RPL37AP8A6NKH3 93 aa3.35□□□□□ -1.87
TMEM260-210ENST00000556422 SLPIP03973 132 aa3.35□□□□□ -1.87
TMEM260-210ENST00000556422 DNAH9Q9NYC9 4486 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 H3BNG1 76 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 WFDC10BQ8IUB3 73 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 Q8NDZ9 215 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 DNAH10Q8IVF4 4471 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 FAM229AH3BQW9 127 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 KPRPQ5T749 579 aaPredicted RBP3.34□□□□□ -1.87
TMEM260-210ENST00000556422 KLK12Q9UKR0 248 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 C22orf24Q9Y442 160 aa3.34□□□□□ -1.87
TMEM260-210ENST00000556422 A0A0J9YWU9 116 aa3.34□□□□□ -1.88
TMEM260-210ENST00000556422 C10orf25Q5T742 122 aa3.34□□□□□ -1.88
TMEM260-210ENST00000556422 C9orf129Q5T035 196 aaKnown RBP3.33□□□□□ -1.88
TMEM260-210ENST00000556422 SMIM11BQ8TCY0 68 aa3.33□□□□□ -1.88
TMEM260-210ENST00000556422 KRTAP26-1Q6PEX3 210 aa3.33□□□□□ -1.88
TMEM260-210ENST00000556422 ASB16-AS1Q495Z4 193 aa3.33□□□□□ -1.88
TMEM260-210ENST00000556422 NOTCH2NLQ7Z3S9 236 aa3.33□□□□□ -1.88
TMEM260-210ENST00000556422 XAGE1AQ9HD64 81 aa3.33□□□□□ -1.88
TMEM260-210ENST00000556422 Q6ZQT0 140 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 A0A1B0GW54 56 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 COX17Q14061 63 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 UNQ6190/PRO20217Q6UXQ8 127 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 TENM2Q9NT68 2774 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 A0A087WYN8 130 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 C8orf17Q9NRJ1 99 aa3.32□□□□□ -1.88
TMEM260-210ENST00000556422 PRKDCP78527 4128 aaKnown RBP3.31□□□□□ -1.88
TMEM260-210ENST00000556422 DYNC2H1Q8NCM8 4307 aaKnown RBP3.31□□□□□ -1.88
TMEM260-210ENST00000556422 DEFB131BA0A096LNP1 70 aa3.31□□□□□ -1.88
TMEM260-210ENST00000556422 A8MWP4 228 aa3.31□□□□□ -1.88
TMEM260-210ENST00000556422 K7EIL1 84 aa3.3□□□□□ -1.88
TMEM260-210ENST00000556422 LORP23490 312 aaPredicted RBP3.3□□□□□ -1.88
TMEM260-210ENST00000556422 C6orf48Q9UBA6 75 aa3.3□□□□□ -1.88
TMEM260-210ENST00000556422 GVQW2A0A096LPI5 108 aaPredicted RBP3.3□□□□□ -1.88
TMEM260-210ENST00000556422 C15orf56Q8N910 161 aa3.3□□□□□ -1.88
TMEM260-210ENST00000556422 OBSCN-AS1Q96MR7 158 aa3.29□□□□□ -1.88
TMEM260-210ENST00000556422 PLECQ15149 4684 aaKnown RBP3.29□□□□□ -1.88
TMEM260-210ENST00000556422 LINC01556Q5JQF7 62 aa3.29□□□□□ -1.88
TMEM260-210ENST00000556422 CAMK2N2Q96S95 79 aa3.29□□□□□ -1.88
TMEM260-210ENST00000556422 PDE6GP18545 87 aa3.29□□□□□ -1.88
TMEM260-210ENST00000556422 ELOF1P60002 83 aaKnown RBP3.29□□□□□ -1.88
TMEM260-210ENST00000556422 STARD9Q9P2P6 4700 aa3.28□□□□□ -1.88
TMEM260-210ENST00000556422 OCR1Q9BZK8 76 aa3.28□□□□□ -1.88
TMEM260-210ENST00000556422 DHRS4-AS1Q9P1J3 65 aa3.28□□□□□ -1.88
TMEM260-210ENST00000556422 DNHD1Q96M86 4753 aa3.28□□□□□ -1.88
TMEM260-210ENST00000556422 DNAH10OSP0CZ25 163 aa3.28□□□□□ -1.88
TMEM260-210ENST00000556422 MUC7Q8TAX7 377 aa3.28□□□□□ -1.88
TMEM260-210ENST00000556422 SPINK7P58062 85 aa3.27□□□□□ -1.89
TMEM260-210ENST00000556422 LINC00167Q96N53 147 aa3.27□□□□□ -1.89
TMEM260-210ENST00000556422 IGLV6-57P01721 117 aa3.27□□□□□ -1.89
TMEM260-210ENST00000556422 Q8N9L7 120 aa3.27□□□□□ -1.89
TMEM260-210ENST00000556422 Q6ZR54 194 aa3.27□□□□□ -1.89
TMEM260-210ENST00000556422 NDUFAF8A1L188 74 aa3.26□□□□□ -1.89
TMEM260-210ENST00000556422 IGKV2D-24A0A075B6R9 120 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 ETDCA0A1B0GVM5 59 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 CASC10Q5T4H9 136 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 MEGF8Q7Z7M0 2845 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 A0A1W2PNM2 257 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 H0Y9P7 68 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 SPINT4Q6UDR6 99 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 KMT2AQ03164 3969 aa3.25□□□□□ -1.89
TMEM260-210ENST00000556422 LINC00575Q6W349 94 aa3.24□□□□□ -1.89
TMEM260-210ENST00000556422 SMIM29Q86T20 159 aa3.24□□□□□ -1.89
TMEM260-210ENST00000556422 Q9BRP9 147 aa3.24□□□□□ -1.89
TMEM260-210ENST00000556422 COA5Q86WW8 74 aa3.23□□□□□ -1.89
TMEM260-210ENST00000556422 A0A087X002 238 aa3.23□□□□□ -1.89
TMEM260-210ENST00000556422 KRTAP1-5Q9BYS1 174 aa3.23□□□□□ -1.89
TMEM260-210ENST00000556422 LINC01558Q9Y6Z2 57 aa3.23□□□□□ -1.89
TMEM260-210ENST00000556422 C20orf166-AS1Q96NR2 134 aa3.22□□□□□ -1.89
TMEM260-210ENST00000556422 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.22□□□□□ -1.89
TMEM260-210ENST00000556422 VPS13DQ5THJ4 4388 aa3.22□□□□□ -1.89
TMEM260-210ENST00000556422 KRTAP7-1Q8IUC3 87 aa3.22□□□□□ -1.89
TMEM260-210ENST00000556422 HECTD4Q9Y4D8 3996 aa3.22□□□□□ -1.89
TMEM260-210ENST00000556422 TLX1NBP0CAT3 122 aa3.21□□□□□ -1.9
TMEM260-210ENST00000556422 Q6ZQY7 126 aa3.21□□□□□ -1.9
TMEM260-210ENST00000556422 DNAH2Q9P225 4427 aa3.21□□□□□ -1.9
TMEM260-210ENST00000556422 RTL8CO15255 209 aa3.2□□□□□ -1.9
TMEM260-210ENST00000556422 LOC110117498A0A087WWA1 95 aa3.2□□□□□ -1.9
TMEM260-210ENST00000556422 FAM168BA1KXE4 195 aa3.2□□□□□ -1.9
TMEM260-210ENST00000556422 APLNQ9ULZ1 77 aa3.2□□□□□ -1.9
TMEM260-210ENST00000556422 IGKV4-1P06312 121 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 CIRBP-AS1Q8TBR5 109 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 SRRM2Q9UQ35 2752 aaKnown RBP3.19□□□□□ -1.9
TMEM260-210ENST00000556422 SPANXA2-OT1Q8N9U9 137 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 C7orf33Q8WU49 177 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 TGP01266 2768 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 M0R2N4 97 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 COX7BP24311 80 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 KCNQ1DNQ9H478 68 aa3.19□□□□□ -1.9
TMEM260-210ENST00000556422 KRTAP4-16G5E9R7 235 aaPredicted RBP3.19□□□□□ -1.9
TMEM260-210ENST00000556422 FRAS1Q86XX4 4008 aa3.18□□□□□ -1.9
TMEM260-210ENST00000556422 IGLV5-37A0A075B6J1 123 aa3.18□□□□□ -1.9
TMEM260-210ENST00000556422 LINC00483Q53H64 154 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 175.2 ms