RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 SMIM29Q86T20 159 aa10.84□□□□□ -0.67
SPIDR-227ENST00000541342 Q8NBF4 154 aa10.84□□□□□ -0.67
SPIDR-227ENST00000541342 TGP01266 2768 aa10.84□□□□□ -0.67
SPIDR-227ENST00000541342 ETDCA0A1B0GVM5 59 aa10.84□□□□□ -0.67
SPIDR-227ENST00000541342 HIGD2AQ9BW72 106 aa10.84□□□□□ -0.67
SPIDR-227ENST00000541342 SMIM26A0A096LP01 95 aa10.83□□□□□ -0.68
SPIDR-227ENST00000541342 ATP5EP56381 51 aaPredicted RBP10.83□□□□□ -0.68
SPIDR-227ENST00000541342 SPRR4Q96PI1 79 aa10.83□□□□□ -0.68
SPIDR-227ENST00000541342 A0A096LNI7 61 aa10.82□□□□□ -0.68
SPIDR-227ENST00000541342 A0A1B0GW54 56 aa10.82□□□□□ -0.68
SPIDR-227ENST00000541342 FAM229BQ4G0N7 80 aa10.82□□□□□ -0.68
SPIDR-227ENST00000541342 SRRM2Q9UQ35 2752 aaKnown RBP10.81□□□□□ -0.68
SPIDR-227ENST00000541342 HECTD4Q9Y4D8 3996 aa10.81□□□□□ -0.68
SPIDR-227ENST00000541342 DSCR10P59022 87 aa10.81□□□□□ -0.68
SPIDR-227ENST00000541342 C14orf177Q52M58 125 aa10.81□□□□□ -0.68
SPIDR-227ENST00000541342 MRPL55Q7Z7F7 128 aaKnown RBP10.81□□□□□ -0.68
SPIDR-227ENST00000541342 FAM30AQ9NZY2 134 aa10.81□□□□□ -0.68
SPIDR-227ENST00000541342 LINC00336Q6ZUF6 198 aa10.8□□□□□ -0.68
SPIDR-227ENST00000541342 C16orf90A8MZG2 172 aa10.79□□□□□ -0.68
SPIDR-227ENST00000541342 LCE6AA0A183 80 aa10.79□□□□□ -0.68
SPIDR-227ENST00000541342 IGKV2-24A0A0C4DH68 120 aa10.79□□□□□ -0.68
SPIDR-227ENST00000541342 A0A0G2JQZ4 141 aa10.77□□□□□ -0.69
SPIDR-227ENST00000541342 A0A1W2PNN7 141 aa10.77□□□□□ -0.69
SPIDR-227ENST00000541342 K7EQZ3 153 aa10.77□□□□□ -0.69
SPIDR-227ENST00000541342 DNAH6Q9C0G6 4158 aa10.76□□□□□ -0.69
SPIDR-227ENST00000541342 UBE2BP63146 152 aa10.75□□□□□ -0.69
SPIDR-227ENST00000541342 Q6ZR54 194 aa10.75□□□□□ -0.69
SPIDR-227ENST00000541342 CHTF8P0CG12 524 aa10.74□□□□□ -0.69
SPIDR-227ENST00000541342 DNAH17Q9UFH2 4485 aa10.74□□□□□ -0.69
SPIDR-227ENST00000541342 C9orf163Q8N9P6 203 aa10.74□□□□□ -0.69
SPIDR-227ENST00000541342 REG3GQ6UW15 175 aa10.73□□□□□ -0.69
SPIDR-227ENST00000541342 LINC00476Q8WZB0 136 aa10.73□□□□□ -0.69
SPIDR-227ENST00000541342 ZCCHC13Q8WW36 166 aaKnown RBP10.7□□□□□ -0.7
SPIDR-227ENST00000541342 A0A087WTM6 91 aa10.69□□□□□ -0.7
SPIDR-227ENST00000541342 FRAS1Q86XX4 4008 aa10.69□□□□□ -0.7
SPIDR-227ENST00000541342 IGFL1Q6UW32 110 aa10.69□□□□□ -0.7
SPIDR-227ENST00000541342 ALMS1Q8TCU4 4167 aa10.68□□□□□ -0.7
SPIDR-227ENST00000541342 PANO1I0J062 215 aa10.68□□□□□ -0.7
SPIDR-227ENST00000541342 PRLHP81277 87 aa10.67□□□□□ -0.7
SPIDR-227ENST00000541342 PRO0628Q9UI54 55 aa10.67□□□□□ -0.7
SPIDR-227ENST00000541342 LY6G6CO95867 125 aa10.66□□□□□ -0.7
SPIDR-227ENST00000541342 DEFB116Q30KQ4 102 aa10.66□□□□□ -0.7
SPIDR-227ENST00000541342 WWC2-AS2Q96NR7 200 aa10.66□□□□□ -0.7
SPIDR-227ENST00000541342 MPLKIPQ8TAP9 179 aa10.65□□□□□ -0.7
SPIDR-227ENST00000541342 HYDINQ4G0P3 5121 aa10.65□□□□□ -0.7
SPIDR-227ENST00000541342 KRTAP11-1Q8IUC1 163 aa10.65□□□□□ -0.7
SPIDR-227ENST00000541342 HCG22E2RYF7 251 aa10.64□□□□□ -0.71
SPIDR-227ENST00000541342 PHF5AQ7RTV0 110 aaKnown RBP10.64□□□□□ -0.71
SPIDR-227ENST00000541342 IGLV8-61A0A075B6I0 122 aa10.62□□□□□ -0.71
SPIDR-227ENST00000541342 hDV103S1A0JD37 113 aa10.61□□□□□ -0.71
SPIDR-227ENST00000541342 C1orf134Q5TEV5 83 aa10.61□□□□□ -0.71
SPIDR-227ENST00000541342 PKIGQ9Y2B9 76 aa10.61□□□□□ -0.71
SPIDR-227ENST00000541342 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.61□□□□□ -0.71
SPIDR-227ENST00000541342 A0A087WSZ3 146 aa10.6□□□□□ -0.71
SPIDR-227ENST00000541342 DNAH8Q96JB1 4490 aa10.6□□□□□ -0.71
SPIDR-227ENST00000541342 DNAH11Q96DT5 4516 aa10.6□□□□□ -0.71
SPIDR-227ENST00000541342 RTL8CO15255 209 aa10.59□□□□□ -0.71
SPIDR-227ENST00000541342 C1orf64Q8NEQ6 169 aa10.58□□□□□ -0.72
SPIDR-227ENST00000541342 SPACA4Q8TDM5 124 aa10.58□□□□□ -0.72
SPIDR-227ENST00000541342 DNAH5Q8TE73 4624 aa10.57□□□□□ -0.72
SPIDR-227ENST00000541342 RPL37AP61513 92 aaKnown RBP10.56□□□□□ -0.72
SPIDR-227ENST00000541342 WFDC13Q8IUB5 93 aa10.56□□□□□ -0.72
SPIDR-227ENST00000541342 FAT2Q9NYQ8 4349 aa10.55□□□□□ -0.72
SPIDR-227ENST00000541342 KRTAP29-1A8MX34 341 aaPredicted RBP10.53□□□□□ -0.72
SPIDR-227ENST00000541342 BRK1Q8WUW1 75 aa10.53□□□□□ -0.72
SPIDR-227ENST00000541342 PKD1P98161 4303 aa10.52□□□□□ -0.73
SPIDR-227ENST00000541342 UBE2AP49459 152 aa10.51□□□□□ -0.73
SPIDR-227ENST00000541342 PRR4Q16378 134 aa10.51□□□□□ -0.73
SPIDR-227ENST00000541342 IGLV5-52A0A0A0MRZ9 124 aa10.5□□□□□ -0.73
SPIDR-227ENST00000541342 CYP4F30PQ9H0H9 118 aa10.5□□□□□ -0.73
SPIDR-227ENST00000541342 SACSQ9NZJ4 4579 aa10.48□□□□□ -0.73
SPIDR-227ENST00000541342 SPRR1BP22528 89 aa10.48□□□□□ -0.73
SPIDR-227ENST00000541342 H0Y9J4 135 aa10.46□□□□□ -0.73
SPIDR-227ENST00000541342 LINC00472Q9H8W2 130 aa10.46□□□□□ -0.73
SPIDR-227ENST00000541342 TRAV22A0A0B4J277 110 aa10.46□□□□□ -0.73
SPIDR-227ENST00000541342 Q1T7F1 81 aa10.46□□□□□ -0.73
SPIDR-227ENST00000541342 PRR15Q8IV56 129 aa10.45□□□□□ -0.74
SPIDR-227ENST00000541342 KRTAP13-1Q8IUC0 172 aa10.44□□□□□ -0.74
SPIDR-227ENST00000541342 KRTAP10-2P60368 255 aa10.44□□□□□ -0.74
SPIDR-227ENST00000541342 LINC00208Q96KT6 92 aa10.43□□□□□ -0.74
SPIDR-227ENST00000541342 PLAC8Q9NZF1 115 aa10.43□□□□□ -0.74
SPIDR-227ENST00000541342 CASC2Q6XLA1 102 aa10.42□□□□□ -0.74
SPIDR-227ENST00000541342 MP68P56378 58 aa10.42□□□□□ -0.74
SPIDR-227ENST00000541342 A8MWP4 228 aa10.41□□□□□ -0.74
SPIDR-227ENST00000541342 NDUFB1O75438 58 aa10.41□□□□□ -0.74
SPIDR-227ENST00000541342 H0Y9P7 68 aa10.39□□□□□ -0.75
SPIDR-227ENST00000541342 PSORS1C2Q9UIG4 136 aa10.37□□□□□ -0.75
SPIDR-227ENST00000541342 PSPHP1O15172 72 aa10.36□□□□□ -0.75
SPIDR-227ENST00000541342 MMP24-AS1A0A0U1RRL7 71 aa10.34□□□□□ -0.75
SPIDR-227ENST00000541342 SPANXA2-OT1Q8N9U9 137 aa10.33□□□□□ -0.76
SPIDR-227ENST00000541342 Q96NJ1 140 aa10.32□□□□□ -0.76
SPIDR-227ENST00000541342 H3BPC8 53 aa10.32□□□□□ -0.76
SPIDR-227ENST00000541342 PKHD1P08F94 4074 aa10.31□□□□□ -0.76
SPIDR-227ENST00000541342 LRP1BQ9NZR2 4599 aa10.3□□□□□ -0.76
SPIDR-227ENST00000541342 CIRBP-AS1Q8TBR5 109 aa10.3□□□□□ -0.76
SPIDR-227ENST00000541342 KRTAP10-1P60331 282 aa10.29□□□□□ -0.76
SPIDR-227ENST00000541342 A8MUN3 132 aa10.27□□□□□ -0.76
SPIDR-227ENST00000541342 ASB16-AS1Q495Z4 193 aa10.27□□□□□ -0.77
SPIDR-227ENST00000541342 Q6ZSA8 131 aa10.26□□□□□ -0.77
SPIDR-227ENST00000541342 IGLV9-49A0A0B4J1Y8 123 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms