RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ATP5EP56381 51 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-214ENST00000637038 C6orf223Q8N319 242 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 PRR26Q8N8Z3 221 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 CAMK2N2Q96S95 79 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 CXCL6P80162 114 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 KIAA0087Q14695 138 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 KLK12Q9UKR0 248 aa2.72□□□□□ -1.97
SCN1A-214ENST00000637038 M0R378 163 aa2.71□□□□□ -1.97
SCN1A-214ENST00000637038 PMAIP1Q13794 54 aa2.71□□□□□ -1.97
SCN1A-214ENST00000637038 A0A087WVE0 104 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 Q6ZQY7 126 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 DNAH10Q8IVF4 4471 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 COL6A5A8TX70 2615 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 ZNF73O43830 326 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-214ENST00000637038 UNQ6190/PRO20217Q6UXQ8 127 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 Q6ZQT0 140 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 NKAPP1Q8N9T2 125 aa2.71□□□□□ -1.98
SCN1A-214ENST00000637038 IGLV6-57P01721 117 aa2.7□□□□□ -1.98
SCN1A-214ENST00000637038 PRR3P79522 188 aaKnown RBP2.7□□□□□ -1.98
SCN1A-214ENST00000637038 C20orf197Q8N268 126 aa2.7□□□□□ -1.98
SCN1A-214ENST00000637038 LYPD5Q6UWN5 251 aa2.7□□□□□ -1.98
SCN1A-214ENST00000637038 C9orf116Q5BN46 136 aaPredicted RBP2.7□□□□□ -1.98
SCN1A-214ENST00000637038 TM2D3Q9BRN9 247 aa2.7□□□□□ -1.98
SCN1A-214ENST00000637038 H3BNG1 76 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 DEFB4AO15263 64 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 LINC01547P58512 204 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-214ENST00000637038 NANOS2P60321 138 aaKnown RBP2.69□□□□□ -1.98
SCN1A-214ENST00000637038 Q6ZVQ6 151 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 RMI2Q96E14 147 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 FUSP35637 526 aaKnown RBP eCLIP2.69□□□□□ -1.98
SCN1A-214ENST00000637038 NREPQ16612 68 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 Q6ZRU5 148 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 PRR34Q9NV39 138 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 SERP1Q9Y6X1 66 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 A0A1B0GW54 56 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 C9orf129Q5T035 196 aaKnown RBP2.69□□□□□ -1.98
SCN1A-214ENST00000637038 OTOGQ6ZRI0 2925 aa2.69□□□□□ -1.98
SCN1A-214ENST00000637038 FP248Q71RG6 208 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-214ENST00000637038 ELOF1P60002 83 aaKnown RBP2.68□□□□□ -1.98
SCN1A-214ENST00000637038 HIGD2BQ4VC39 106 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 DHRS4-AS1Q9P1J3 65 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 Q8N1X5 172 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 Q8NAQ8 132 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 XAGE1AQ9HD64 81 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 TENM1Q9UKZ4 2725 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 PRKDCP78527 4128 aaKnown RBP2.68□□□□□ -1.98
SCN1A-214ENST00000637038 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 C6orf48Q9UBA6 75 aa2.68□□□□□ -1.98
SCN1A-214ENST00000637038 NOTCH1P46531 2555 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 IGKV2D-24A0A075B6R9 120 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 F8WEM9 126 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 SYCNQ0VAF6 134 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 C10orf25Q5T742 122 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 NOTCH3Q9UM47 2321 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 HUWE1Q7Z6Z7 4374 aaKnown RBP2.67□□□□□ -1.98
SCN1A-214ENST00000637038 ETDCA0A1B0GVM5 59 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 BPY2O14599 106 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 ERC2-IT1O76042 136 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 C16orf90A8MZG2 172 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 CELA1Q9UNI1 258 aa2.67□□□□□ -1.98
SCN1A-214ENST00000637038 TRAV10A0A0B4J240 114 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 TRBV7-4A0A0J9YYF1 115 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 Q8N3U1 123 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 RBM12B-AS1Q9P1G2 102 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 PLA2G2DQ9UNK4 145 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 TLN2Q9Y4G6 2542 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 SMIM26A0A096LP01 95 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 KLKP1Q107X0 134 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 C1orf134Q5TEV5 83 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 BRK1Q8WUW1 75 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.66□□□□□ -1.98
SCN1A-214ENST00000637038 VPREB1P12018 145 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 PRR15Q8IV56 129 aa2.66□□□□□ -1.98
SCN1A-214ENST00000637038 FBN1P35555 2871 aaKnown RBP2.65□□□□□ -1.98
SCN1A-214ENST00000637038 FLNAP21333 2647 aaKnown RBP2.65□□□□□ -1.98
SCN1A-214ENST00000637038 PKD1L1Q8TDX9 2849 aa2.65□□□□□ -1.98
SCN1A-214ENST00000637038 PRYO14603 147 aa2.65□□□□□ -1.98
SCN1A-214ENST00000637038 LINC01556Q5JQF7 62 aa2.65□□□□□ -1.99
SCN1A-214ENST00000637038 HECTD4Q9Y4D8 3996 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 C8orf87E5RJ46 101 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 KRTAP10-3P60369 221 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 SCXQ7RTU7 201 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 NSD1Q96L73 2696 aaPredicted RBP2.64□□□□□ -1.99
SCN1A-214ENST00000637038 ITPR2Q14571 2701 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 DEFB131BA0A096LNP1 70 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 WFDC10BQ8IUB3 73 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 DEFB105AQ8NG35 78 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 TMEM254Q8TBM7 123 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 SNURFQ9Y675 71 aa2.64□□□□□ -1.99
SCN1A-214ENST00000637038 KCNQ1DNQ9H478 68 aa2.63□□□□□ -1.99
SCN1A-214ENST00000637038 H7BZZ5 65 aa2.63□□□□□ -1.99
SCN1A-214ENST00000637038 MGAM2Q2M2H8 2515 aa2.63□□□□□ -1.99
SCN1A-214ENST00000637038 UBE2BP63146 152 aa2.63□□□□□ -1.99
SCN1A-214ENST00000637038 MRPL55Q7Z7F7 128 aaKnown RBP2.62□□□□□ -1.99
SCN1A-214ENST00000637038 Q8NDZ9 215 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 COL7A1Q02388 2944 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 FRAS1Q86XX4 4008 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 TLX1NBP0CAT3 122 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 Q6ZTC4 211 aa2.62□□□□□ -1.99
SCN1A-214ENST00000637038 C15orf56Q8N910 161 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms