RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 Q6ZRN7 208 aaPredicted RBP14.13□□□□□ -0.15
PNKP-220ENST00000627232 FAM19A5Q7Z5A7 132 aaPredicted RBP14.13□□□□□ -0.15
PNKP-220ENST00000627232 PKIGQ9Y2B9 76 aa14.13□□□□□ -0.15
PNKP-220ENST00000627232 SMCR5Q8TEV8 140 aa14.12□□□□□ -0.15
PNKP-220ENST00000627232 LAMTOR3Q9UHA4 124 aa14.12□□□□□ -0.15
PNKP-220ENST00000627232 A0A096LNI7 61 aa14.11□□□□□ -0.15
PNKP-220ENST00000627232 RBM3P98179 157 aaKnown RBP14.11□□□□□ -0.15
PNKP-220ENST00000627232 A0A1B0GV72 72 aa14.1□□□□□ -0.15
PNKP-220ENST00000627232 RPL37AP8A6NKH3 93 aa14.1□□□□□ -0.15
PNKP-220ENST00000627232 KRTAP4-16G5E9R7 235 aaPredicted RBP14.1□□□□□ -0.15
PNKP-220ENST00000627232 LOC110117498A0A087WWA1 95 aa14.09□□□□□ -0.15
PNKP-220ENST00000627232 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.08□□□□□ -0.16
PNKP-220ENST00000627232 TRBV7-7A0A0K0K1E9 115 aa14.08□□□□□ -0.16
PNKP-220ENST00000627232 B5MCH6 92 aa14.08□□□□□ -0.16
PNKP-220ENST00000627232 DHRS4-AS1Q9P1J3 65 aa14.08□□□□□ -0.16
PNKP-220ENST00000627232 Q6ZRX8 168 aa14.07□□□□□ -0.16
PNKP-220ENST00000627232 ETDCA0A1B0GVM5 59 aa14.06□□□□□ -0.16
PNKP-220ENST00000627232 PDE6GP18545 87 aa14.06□□□□□ -0.16
PNKP-220ENST00000627232 C9orf163Q8N9P6 203 aa14.06□□□□□ -0.16
PNKP-220ENST00000627232 Q6ZQT0 140 aa14.05□□□□□ -0.16
PNKP-220ENST00000627232 IMUPQ9GZP8 106 aa14.05□□□□□ -0.16
PNKP-220ENST00000627232 LINC00846Q9NV44 126 aa14.04□□□□□ -0.16
PNKP-220ENST00000627232 IGKV2-24A0A0C4DH68 120 aa14.03□□□□□ -0.16
PNKP-220ENST00000627232 NDUFV3P56181 108 aaKnown RBP14.03□□□□□ -0.16
PNKP-220ENST00000627232 DSCR8Q96T75 97 aa14.03□□□□□ -0.16
PNKP-220ENST00000627232 REG3GQ6UW15 175 aa14.01□□□□□ -0.17
PNKP-220ENST00000627232 A0A1W2PNN7 141 aa14□□□□□ -0.17
PNKP-220ENST00000627232 M0R2N4 97 aa14□□□□□ -0.17
PNKP-220ENST00000627232 Q9BRP9 147 aa14□□□□□ -0.17
PNKP-220ENST00000627232 Q6JHZ5 121 aa13.99□□□□□ -0.17
PNKP-220ENST00000627232 Q6ZR54 194 aa13.99□□□□□ -0.17
PNKP-220ENST00000627232 PRKDCP78527 4128 aaKnown RBP13.99□□□□□ -0.17
PNKP-220ENST00000627232 CSMD3Q7Z407 3707 aa13.98□□□□□ -0.17
PNKP-220ENST00000627232 TRBV7-4A0A0J9YYF1 115 aa13.98□□□□□ -0.17
PNKP-220ENST00000627232 LINC00474Q9P2X8 69 aa13.97□□□□□ -0.17
PNKP-220ENST00000627232 DNAH7Q8WXX0 4024 aa13.97□□□□□ -0.17
PNKP-220ENST00000627232 PLECQ15149 4684 aaKnown RBP13.96□□□□□ -0.17
PNKP-220ENST00000627232 A0A087WTM6 91 aa13.94□□□□□ -0.18
PNKP-220ENST00000627232 LINC01547P58512 204 aaPredicted RBP13.94□□□□□ -0.18
PNKP-220ENST00000627232 Q8N377 158 aa13.94□□□□□ -0.18
PNKP-220ENST00000627232 VPS13DQ5THJ4 4388 aa13.93□□□□□ -0.18
PNKP-220ENST00000627232 CHTF8P0CG12 524 aa13.93□□□□□ -0.18
PNKP-220ENST00000627232 MEGF8Q7Z7M0 2845 aa13.92□□□□□ -0.18
PNKP-220ENST00000627232 IGLV5-48A0A075B6I7 105 aa13.92□□□□□ -0.18
PNKP-220ENST00000627232 UBE2BP63146 152 aa13.91□□□□□ -0.18
PNKP-220ENST00000627232 LYSTQ99698 3801 aa13.9□□□□□ -0.18
PNKP-220ENST00000627232 ATP5EP2Q5VTU8 51 aa13.9□□□□□ -0.19
PNKP-220ENST00000627232 DEFB105AQ8NG35 78 aa13.9□□□□□ -0.19
PNKP-220ENST00000627232 UBL5Q9BZL1 73 aa13.9□□□□□ -0.19
PNKP-220ENST00000627232 DNAH10Q8IVF4 4471 aa13.89□□□□□ -0.19
PNKP-220ENST00000627232 STARD9Q9P2P6 4700 aa13.87□□□□□ -0.19
PNKP-220ENST00000627232 PHF5AQ7RTV0 110 aaKnown RBP13.87□□□□□ -0.19
PNKP-220ENST00000627232 DNHD1Q96M86 4753 aa13.87□□□□□ -0.19
PNKP-220ENST00000627232 FAM19A1Q7Z5A9 133 aa13.86□□□□□ -0.19
PNKP-220ENST00000627232 ANAPC13Q9BS18 74 aa13.86□□□□□ -0.19
PNKP-220ENST00000627232 ERC2-IT1O76042 136 aa13.85□□□□□ -0.19
PNKP-220ENST00000627232 IGKV3D-7A0A0C4DH55 119 aa13.85□□□□□ -0.19
PNKP-220ENST00000627232 ST20-AS1Q8NBB2 130 aa13.85□□□□□ -0.19
PNKP-220ENST00000627232 WWC2-AS2Q96NR7 200 aa13.85□□□□□ -0.19
PNKP-220ENST00000627232 EPM2AB3EWF7 344 aa13.84□□□□□ -0.19
PNKP-220ENST00000627232 C1orf134Q5TEV5 83 aa13.84□□□□□ -0.19
PNKP-220ENST00000627232 TENM2Q9NT68 2774 aa13.83□□□□□ -0.2
PNKP-220ENST00000627232 H0Y9J4 135 aa13.82□□□□□ -0.2
PNKP-220ENST00000627232 SPACA4Q8TDM5 124 aa13.82□□□□□ -0.2
PNKP-220ENST00000627232 FAM236AA0A1B0GUQ0 79 aa13.8□□□□□ -0.2
PNKP-220ENST00000627232 FAM236BA0A1B0GV22 79 aa13.8□□□□□ -0.2
PNKP-220ENST00000627232 PANO1I0J062 215 aa13.8□□□□□ -0.2
PNKP-220ENST00000627232 RTL8CO15255 209 aa13.8□□□□□ -0.2
PNKP-220ENST00000627232 LY6G6CO95867 125 aa13.8□□□□□ -0.2
PNKP-220ENST00000627232 TNP2Q05952 138 aa13.8□□□□□ -0.2
PNKP-220ENST00000627232 PRLHP81277 87 aa13.79□□□□□ -0.2
PNKP-220ENST00000627232 KRTAP11-1Q8IUC1 163 aa13.79□□□□□ -0.2
PNKP-220ENST00000627232 Q6ZVQ6 151 aa13.78□□□□□ -0.2
PNKP-220ENST00000627232 LINC00476Q8WZB0 136 aa13.78□□□□□ -0.2
PNKP-220ENST00000627232 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.77□□□□□ -0.21
PNKP-220ENST00000627232 DPH3Q96FX2 82 aa13.76□□□□□ -0.21
PNKP-220ENST00000627232 A0A1B0GW54 56 aa13.75□□□□□ -0.21
PNKP-220ENST00000627232 C3orf22Q8N5N4 141 aa13.75□□□□□ -0.21
PNKP-220ENST00000627232 HIST1H4AP62805 103 aaKnown RBP13.74□□□□□ -0.21
PNKP-220ENST00000627232 HIGD2AQ9BW72 106 aa13.74□□□□□ -0.21
PNKP-220ENST00000627232 SMIM29Q86T20 159 aa13.73□□□□□ -0.21
PNKP-220ENST00000627232 BCE1O60756 84 aa13.71□□□□□ -0.21
PNKP-220ENST00000627232 C1orf137Q5JT78 98 aa13.71□□□□□ -0.21
PNKP-220ENST00000627232 UBE2AP49459 152 aa13.7□□□□□ -0.22
PNKP-220ENST00000627232 CXCL6P80162 114 aa13.7□□□□□ -0.22
PNKP-220ENST00000627232 IGLV5-52A0A0A0MRZ9 124 aa13.69□□□□□ -0.22
PNKP-220ENST00000627232 F8WEM9 126 aa13.69□□□□□ -0.22
PNKP-220ENST00000627232 C3orf84H3BNL1 204 aa13.69□□□□□ -0.22
PNKP-220ENST00000627232 FUSP35637 526 aaKnown RBP eCLIP13.69□□□□□ -0.22
PNKP-220ENST00000627232 HAMPP81172 84 aa13.69□□□□□ -0.22
PNKP-220ENST00000627232 FBN3Q75N90 2809 aa13.67□□□□□ -0.22
PNKP-220ENST00000627232 SPRR1BP22528 89 aa13.67□□□□□ -0.22
PNKP-220ENST00000627232 A0A1W2PNM2 257 aa13.66□□□□□ -0.22
PNKP-220ENST00000627232 KRTAP13-1Q8IUC0 172 aa13.66□□□□□ -0.22
PNKP-220ENST00000627232 Q8NBF4 154 aa13.66□□□□□ -0.22
PNKP-220ENST00000627232 PLAC8Q9NZF1 115 aa13.66□□□□□ -0.22
PNKP-220ENST00000627232 IGLV8-61A0A075B6I0 122 aa13.65□□□□□ -0.22
PNKP-220ENST00000627232 DNAH6Q9C0G6 4158 aa13.65□□□□□ -0.22
PNKP-220ENST00000627232 A0A087WVE0 104 aa13.64□□□□□ -0.23
PNKP-220ENST00000627232 ATOX1O00244 68 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms