RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 C20orf197Q8N268 126 aa13.96□□□□□ -0.17
LIME1-210ENST00000621325 C14orf132Q9NPU4 83 aa13.96□□□□□ -0.17
LIME1-210ENST00000621325 SERP1Q9Y6X1 66 aa13.96□□□□□ -0.17
LIME1-210ENST00000621325 VPREB1P12018 145 aa13.96□□□□□ -0.17
LIME1-210ENST00000621325 LYSTQ99698 3801 aa13.95□□□□□ -0.18
LIME1-210ENST00000621325 GHRHP01286 108 aa13.94□□□□□ -0.18
LIME1-210ENST00000621325 LINC00167Q96N53 147 aa13.94□□□□□ -0.18
LIME1-210ENST00000621325 ORMDL1Q9P0S3 153 aa13.94□□□□□ -0.18
LIME1-210ENST00000621325 BRK1Q8WUW1 75 aa13.93□□□□□ -0.18
LIME1-210ENST00000621325 LINC00575Q6W349 94 aa13.92□□□□□ -0.18
LIME1-210ENST00000621325 B9D2Q9BPU9 175 aa13.92□□□□□ -0.18
LIME1-210ENST00000621325 TRAV23DV6A0A075B6W5 121 aa13.91□□□□□ -0.18
LIME1-210ENST00000621325 KRTAP1-5Q9BYS1 174 aa13.89□□□□□ -0.19
LIME1-210ENST00000621325 LINC00474Q9P2X8 69 aa13.89□□□□□ -0.19
LIME1-210ENST00000621325 H7BZZ5 65 aa13.88□□□□□ -0.19
LIME1-210ENST00000621325 OBSCN-AS1Q96MR7 158 aa13.88□□□□□ -0.19
LIME1-210ENST00000621325 M0R378 163 aa13.86□□□□□ -0.19
LIME1-210ENST00000621325 RMI2Q96E14 147 aa13.86□□□□□ -0.19
LIME1-210ENST00000621325 ZNF73O43830 326 aaPredicted RBP13.85□□□□□ -0.19
LIME1-210ENST00000621325 DIRC1Q969H9 104 aa13.85□□□□□ -0.19
LIME1-210ENST00000621325 APLNQ9ULZ1 77 aa13.85□□□□□ -0.19
LIME1-210ENST00000621325 SMIM26A0A096LP01 95 aa13.85□□□□□ -0.19
LIME1-210ENST00000621325 SERTAD4-AS1Q5TG53 156 aa13.84□□□□□ -0.19
LIME1-210ENST00000621325 DNAH10Q8IVF4 4471 aa13.83□□□□□ -0.19
LIME1-210ENST00000621325 FAM19A1Q7Z5A9 133 aa13.83□□□□□ -0.2
LIME1-210ENST00000621325 CSMD3Q7Z407 3707 aa13.83□□□□□ -0.2
LIME1-210ENST00000621325 TENM2Q9NT68 2774 aa13.83□□□□□ -0.2
LIME1-210ENST00000621325 TMEM256-PLSCR3K7ERE1 68 aa13.81□□□□□ -0.2
LIME1-210ENST00000621325 DYNC2H1Q8NCM8 4307 aaKnown RBP13.81□□□□□ -0.2
LIME1-210ENST00000621325 UBE2DNLQ8IWF7 75 aa13.81□□□□□ -0.2
LIME1-210ENST00000621325 TLX1NBP0CAT3 122 aa13.8□□□□□ -0.2
LIME1-210ENST00000621325 Q6ZQY7 126 aa13.79□□□□□ -0.2
LIME1-210ENST00000621325 FAM168BA1KXE4 195 aa13.79□□□□□ -0.2
LIME1-210ENST00000621325 COX7BP24311 80 aa13.79□□□□□ -0.2
LIME1-210ENST00000621325 PRKDCP78527 4128 aaKnown RBP13.78□□□□□ -0.2
LIME1-210ENST00000621325 ELOF1P60002 83 aaKnown RBP13.78□□□□□ -0.2
LIME1-210ENST00000621325 C7orf33Q8WU49 177 aa13.76□□□□□ -0.21
LIME1-210ENST00000621325 PLECQ15149 4684 aaKnown RBP13.76□□□□□ -0.21
LIME1-210ENST00000621325 NKAPP1Q8N9T2 125 aa13.76□□□□□ -0.21
LIME1-210ENST00000621325 DNAH7Q8WXX0 4024 aa13.76□□□□□ -0.21
LIME1-210ENST00000621325 SNURFQ9Y675 71 aa13.75□□□□□ -0.21
LIME1-210ENST00000621325 DNHD1Q96M86 4753 aa13.75□□□□□ -0.21
LIME1-210ENST00000621325 TRBV7-6A0A0J9YX20 115 aa13.73□□□□□ -0.21
LIME1-210ENST00000621325 KRTAP7-1Q8IUC3 87 aa13.73□□□□□ -0.21
LIME1-210ENST00000621325 JMJD7-PLA2G4BH0Y9G9 81 aa13.73□□□□□ -0.21
LIME1-210ENST00000621325 CCKP06307 115 aa13.72□□□□□ -0.21
LIME1-210ENST00000621325 F8WEM9 126 aa13.71□□□□□ -0.21
LIME1-210ENST00000621325 RBM3P98179 157 aaKnown RBP13.71□□□□□ -0.21
LIME1-210ENST00000621325 LINC00528Q8N1L1 170 aa13.71□□□□□ -0.21
LIME1-210ENST00000621325 RPL37AP8A6NKH3 93 aa13.7□□□□□ -0.22
LIME1-210ENST00000621325 KCNQ1DNQ9H478 68 aa13.7□□□□□ -0.22
LIME1-210ENST00000621325 PLA2G2DQ9UNK4 145 aa13.7□□□□□ -0.22
LIME1-210ENST00000621325 PSCAO43653 123 aa13.69□□□□□ -0.22
LIME1-210ENST00000621325 LAMTOR3Q9UHA4 124 aa13.69□□□□□ -0.22
LIME1-210ENST00000621325 KLKP1Q107X0 134 aa13.67□□□□□ -0.22
LIME1-210ENST00000621325 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.67□□□□□ -0.22
LIME1-210ENST00000621325 MPLKIPQ8TAP9 179 aa13.67□□□□□ -0.22
LIME1-210ENST00000621325 MEGF8Q7Z7M0 2845 aa13.66□□□□□ -0.22
LIME1-210ENST00000621325 NUPR2A6NF83 97 aa13.65□□□□□ -0.22
LIME1-210ENST00000621325 FAM229BQ4G0N7 80 aa13.65□□□□□ -0.22
LIME1-210ENST00000621325 TRAV7A0A075B6U4 112 aa13.65□□□□□ -0.22
LIME1-210ENST00000621325 STARD9Q9P2P6 4700 aa13.65□□□□□ -0.22
LIME1-210ENST00000621325 IGLV5-37A0A075B6J1 123 aa13.64□□□□□ -0.23
LIME1-210ENST00000621325 IGLV1-50A0A075B6I6 118 aa13.63□□□□□ -0.23
LIME1-210ENST00000621325 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.63□□□□□ -0.23
LIME1-210ENST00000621325 ATP5EP2Q5VTU8 51 aa13.62□□□□□ -0.23
LIME1-210ENST00000621325 A0A096LNI7 61 aa13.6□□□□□ -0.23
LIME1-210ENST00000621325 CNBPP62633 177 aaKnown RBP13.6□□□□□ -0.23
LIME1-210ENST00000621325 Q6ZQT0 140 aa13.6□□□□□ -0.23
LIME1-210ENST00000621325 NBDYA0A0U1RRE5 68 aa13.6□□□□□ -0.23
LIME1-210ENST00000621325 MRPL55Q7Z7F7 128 aaKnown RBP13.6□□□□□ -0.23
LIME1-210ENST00000621325 IGKV2-24A0A0C4DH68 120 aa13.59□□□□□ -0.23
LIME1-210ENST00000621325 M0R2N4 97 aa13.59□□□□□ -0.23
LIME1-210ENST00000621325 KRTAP4-16G5E9R7 235 aaPredicted RBP13.58□□□□□ -0.24
LIME1-210ENST00000621325 PMAIP1Q13794 54 aa13.58□□□□□ -0.24
LIME1-210ENST00000621325 H3BQ85 93 aa13.57□□□□□ -0.24
LIME1-210ENST00000621325 LOC110117498A0A087WWA1 95 aa13.56□□□□□ -0.24
LIME1-210ENST00000621325 PRYO14603 147 aa13.55□□□□□ -0.24
LIME1-210ENST00000621325 SPRR1AP35321 89 aa13.55□□□□□ -0.24
LIME1-210ENST00000621325 Q6ZRX8 168 aa13.55□□□□□ -0.24
LIME1-210ENST00000621325 VPS13DQ5THJ4 4388 aa13.55□□□□□ -0.24
LIME1-210ENST00000621325 C16orf90A8MZG2 172 aa13.54□□□□□ -0.24
LIME1-210ENST00000621325 Q9BRP9 147 aa13.54□□□□□ -0.24
LIME1-210ENST00000621325 LRCOL1A6NCL2 159 aa13.54□□□□□ -0.24
LIME1-210ENST00000621325 A0A1W2PNN7 141 aa13.53□□□□□ -0.24
LIME1-210ENST00000621325 DEFB105AQ8NG35 78 aa13.53□□□□□ -0.24
LIME1-210ENST00000621325 ETDCA0A1B0GVM5 59 aa13.52□□□□□ -0.24
LIME1-210ENST00000621325 Q6ZRN7 208 aaPredicted RBP13.52□□□□□ -0.25
LIME1-210ENST00000621325 UBL5Q9BZL1 73 aa13.51□□□□□ -0.25
LIME1-210ENST00000621325 CHTF8P0CG12 524 aa13.51□□□□□ -0.25
LIME1-210ENST00000621325 C14orf177Q52M58 125 aa13.51□□□□□ -0.25
LIME1-210ENST00000621325 TRBV7-4A0A0J9YYF1 115 aa13.5□□□□□ -0.25
LIME1-210ENST00000621325 Q8N377 158 aa13.49□□□□□ -0.25
LIME1-210ENST00000621325 BCE1O60756 84 aa13.48□□□□□ -0.25
LIME1-210ENST00000621325 DHRS4-AS1Q9P1J3 65 aa13.48□□□□□ -0.25
LIME1-210ENST00000621325 LINC01547P58512 204 aaPredicted RBP13.48□□□□□ -0.25
LIME1-210ENST00000621325 ST20-AS1Q8NBB2 130 aa13.47□□□□□ -0.25
LIME1-210ENST00000621325 ERC2-IT1O76042 136 aa13.46□□□□□ -0.25
LIME1-210ENST00000621325 REG3GQ6UW15 175 aa13.46□□□□□ -0.25
LIME1-210ENST00000621325 PDE6GP18545 87 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 172.1 ms