RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ST20-AS1Q8NBB2 130 aa8.72□□□□□ -1.01
SHKBP1-228ENST00000602239 MIEN1Q9BRT3 115 aa8.72□□□□□ -1.01
SHKBP1-228ENST00000602239 LGALS3P17931 250 aaKnown RBP8.71□□□□□ -1.02
SHKBP1-228ENST00000602239 NMUP48645 174 aa8.71□□□□□ -1.02
SHKBP1-228ENST00000602239 TRAV23DV6A0A075B6W5 121 aa8.7□□□□□ -1.02
SHKBP1-228ENST00000602239 IGKCP01834 107 aa8.7□□□□□ -1.02
SHKBP1-228ENST00000602239 HERVK_113P61574 105 aa8.7□□□□□ -1.02
SHKBP1-228ENST00000602239 XP32Q5T750 250 aa8.7□□□□□ -1.02
SHKBP1-228ENST00000602239 C9orf153Q5TBE3 101 aa8.7□□□□□ -1.02
SHKBP1-228ENST00000602239 ZNF73O43830 326 aaPredicted RBP8.69□□□□□ -1.02
SHKBP1-228ENST00000602239 HSPB8Q9UJY1 196 aa8.69□□□□□ -1.02
SHKBP1-228ENST00000602239 A0A0J9YXY3 114 aa8.68□□□□□ -1.02
SHKBP1-228ENST00000602239 JOSD1Q15040 202 aaPredicted RBP8.68□□□□□ -1.02
SHKBP1-228ENST00000602239 LCE2CQ5TA81 110 aa8.65□□□□□ -1.02
SHKBP1-228ENST00000602239 E9PLD3 99 aa8.64□□□□□ -1.03
SHKBP1-228ENST00000602239 LCE2DQ5TA82 110 aaPredicted RBP8.63□□□□□ -1.03
SHKBP1-228ENST00000602239 HRCT1Q6UXD1 115 aa8.63□□□□□ -1.03
SHKBP1-228ENST00000602239 C5orf52A6NGY3 159 aa8.62□□□□□ -1.03
SHKBP1-228ENST00000602239 LITAFQ99732 161 aa8.62□□□□□ -1.03
SHKBP1-228ENST00000602239 COLCA2A8K830 154 aa8.61□□□□□ -1.03
SHKBP1-228ENST00000602239 HINT1P49773 126 aaPredicted RBP8.61□□□□□ -1.03
SHKBP1-228ENST00000602239 OR13C6PQ8NH95 151 aa8.61□□□□□ -1.03
SHKBP1-228ENST00000602239 LINC00308Q8TCZ7 52 aa8.61□□□□□ -1.03
SHKBP1-228ENST00000602239 SPRR1BP22528 89 aa8.6□□□□□ -1.03
SHKBP1-228ENST00000602239 KRTAP19-2Q3LHN2 52 aa8.6□□□□□ -1.03
SHKBP1-228ENST00000602239 SPANXCQ9NY87 97 aa8.59□□□□□ -1.03
SHKBP1-228ENST00000602239 C9orf92A6NGG3 77 aa8.57□□□□□ -1.04
SHKBP1-228ENST00000602239 SYS1-DBNDD2H3BUS1 97 aa8.57□□□□□ -1.04
SHKBP1-228ENST00000602239 PCOTHQ58A44 107 aa8.57□□□□□ -1.04
SHKBP1-228ENST00000602239 TTTY13Q9BZ97 58 aa8.57□□□□□ -1.04
SHKBP1-228ENST00000602239 DHRS4-AS1Q9P1J3 65 aa8.57□□□□□ -1.04
SHKBP1-228ENST00000602239 SLC7A5P1Q8MH63 180 aa8.56□□□□□ -1.04
SHKBP1-228ENST00000602239 CBY1Q9Y3M2 126 aa8.56□□□□□ -1.04
SHKBP1-228ENST00000602239 TIMM17BO60830 172 aa8.55□□□□□ -1.04
SHKBP1-228ENST00000602239 LAMTOR3Q9UHA4 124 aa8.55□□□□□ -1.04
SHKBP1-228ENST00000602239 Q1RN00 199 aa8.54□□□□□ -1.04
SHKBP1-228ENST00000602239 SLC25A34Q6PIV7 304 aa8.54□□□□□ -1.04
SHKBP1-228ENST00000602239 DEFB105AQ8NG35 78 aa8.54□□□□□ -1.04
SHKBP1-228ENST00000602239 LIMD2Q9BT23 127 aa8.54□□□□□ -1.04
SHKBP1-228ENST00000602239 SPANXDQ9BXN6 97 aa8.54□□□□□ -1.04
SHKBP1-228ENST00000602239 IGLV8-61A0A075B6I0 122 aa8.53□□□□□ -1.04
SHKBP1-228ENST00000602239 COX7BP24311 80 aa8.53□□□□□ -1.04
SHKBP1-228ENST00000602239 ELOF1P60002 83 aaKnown RBP8.53□□□□□ -1.04
SHKBP1-228ENST00000602239 C6orf99Q4VX62 202 aa8.53□□□□□ -1.04
SHKBP1-228ENST00000602239 ZNF815PA8K554 130 aa8.52□□□□□ -1.05
SHKBP1-228ENST00000602239 MT1HP80294 61 aa8.52□□□□□ -1.05
SHKBP1-228ENST00000602239 TAL2Q16559 108 aa8.52□□□□□ -1.05
SHKBP1-228ENST00000602239 LINC01545Q5VT33 79 aa8.52□□□□□ -1.05
SHKBP1-228ENST00000602239 FSIP2Q5CZC0 6907 aa8.51□□□□□ -1.05
SHKBP1-228ENST00000602239 H7C2G1 150 aa8.51□□□□□ -1.05
SHKBP1-228ENST00000602239 CRCT1Q9UGL9 99 aa8.51□□□□□ -1.05
SHKBP1-228ENST00000602239 A0A0G2JQZ4 141 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BKO60814 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BJP06899 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BOP23527 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BBP33778 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BDP58876 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BCP62807 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST2H2BEQ16778 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BHQ93079 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BNQ99877 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 HIST1H2BMQ99879 126 aa8.5□□□□□ -1.05
SHKBP1-228ENST00000602239 SMIM29Q86T20 159 aa8.49□□□□□ -1.05
SHKBP1-228ENST00000602239 LINC00518Q8N0U6 118 aa8.49□□□□□ -1.05
SHKBP1-228ENST00000602239 TEX49A0A1B0GTD5 131 aa8.48□□□□□ -1.05
SHKBP1-228ENST00000602239 CD164Q04900 197 aa8.48□□□□□ -1.05
SHKBP1-228ENST00000602239 PET117Q6UWS5 81 aa8.48□□□□□ -1.05
SHKBP1-228ENST00000602239 PRO1933Q9H354 126 aa8.48□□□□□ -1.05
SHKBP1-228ENST00000602239 C3orf79P0CE67 100 aa8.46□□□□□ -1.06
SHKBP1-228ENST00000602239 C1orf195Q5TG92 126 aa8.46□□□□□ -1.06
SHKBP1-228ENST00000602239 AKR1D1P51857 326 aa8.45□□□□□ -1.06
SHKBP1-228ENST00000602239 TRBV7-6A0A0J9YX20 115 aa8.44□□□□□ -1.06
SHKBP1-228ENST00000602239 Q5XG85 94 aa8.44□□□□□ -1.06
SHKBP1-228ENST00000602239 IGLV5-48A0A075B6I7 105 aa8.42□□□□□ -1.06
SHKBP1-228ENST00000602239 A6NDN8 102 aa8.42□□□□□ -1.06
SHKBP1-228ENST00000602239 SCGB1D4Q6XE38 83 aa8.42□□□□□ -1.06
SHKBP1-228ENST00000602239 A0A1B0GWB2 263 aa8.41□□□□□ -1.06
SHKBP1-228ENST00000602239 KRTDAPP60985 99 aa8.41□□□□□ -1.06
SHKBP1-228ENST00000602239 ANKRD39Q53RE8 183 aa8.41□□□□□ -1.06
SHKBP1-228ENST00000602239 LORP23490 312 aaPredicted RBP8.4□□□□□ -1.06
SHKBP1-228ENST00000602239 MUSTN1Q8IVN3 82 aa8.4□□□□□ -1.06
SHKBP1-228ENST00000602239 CFC1BP0CG36 223 aa8.39□□□□□ -1.07
SHKBP1-228ENST00000602239 KRTAP10-6P60371 365 aaPredicted RBP8.39□□□□□ -1.07
SHKBP1-228ENST00000602239 IFITM1P13164 125 aa8.38□□□□□ -1.07
SHKBP1-228ENST00000602239 ATOH7Q8N100 152 aa8.38□□□□□ -1.07
SHKBP1-228ENST00000602239 RPL37P61927 97 aaKnown RBP8.37□□□□□ -1.07
SHKBP1-228ENST00000602239 PCP2Q8IVA1 136 aa8.37□□□□□ -1.07
SHKBP1-228ENST00000602239 SMIM11BQ8TCY0 68 aa8.37□□□□□ -1.07
SHKBP1-228ENST00000602239 COA6Q5JTJ3 125 aaKnown RBP8.35□□□□□ -1.07
SHKBP1-228ENST00000602239 COPS9Q8WXC6 57 aa8.35□□□□□ -1.07
SHKBP1-228ENST00000602239 Q6ZVH6 145 aa8.34□□□□□ -1.07
SHKBP1-228ENST00000602239 A4D1N5 150 aa8.33□□□□□ -1.08
SHKBP1-228ENST00000602239 TRAV13-2A0A0B4J235 113 aa8.31□□□□□ -1.08
SHKBP1-228ENST00000602239 M0R2T5 61 aa8.31□□□□□ -1.08
SHKBP1-228ENST00000602239 C20orf202A1L168 122 aa8.3□□□□□ -1.08
SHKBP1-228ENST00000602239 TCL1BO95988 128 aa8.3□□□□□ -1.08
SHKBP1-228ENST00000602239 NHP2Q9NX24 153 aaKnown RBP8.3□□□□□ -1.08
SHKBP1-228ENST00000602239 COX6B2Q6YFQ2 88 aa8.29□□□□□ -1.08
SHKBP1-228ENST00000602239 LINC00575Q6W349 94 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 152.2 ms