RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FAM19A5Q7Z5A7 132 aaPredicted RBP9.09□□□□□ -0.95
LIG3-205ENST00000585941 LYSTQ99698 3801 aa9.08□□□□□ -0.96
LIG3-205ENST00000585941 A0A096LNI7 61 aa9.08□□□□□ -0.96
LIG3-205ENST00000585941 KRTAP7-1Q8IUC3 87 aa9.08□□□□□ -0.96
LIG3-205ENST00000585941 SPRR1AP35321 89 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 Q6ZR54 194 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 C14orf132Q9NPU4 83 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 LINC00474Q9P2X8 69 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 M0R2N4 97 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 SCGB1A1P11684 91 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 XGP55808 180 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 WWC2-AS2Q96NR7 200 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 DHRS4-AS1Q9P1J3 65 aa9.07□□□□□ -0.96
LIG3-205ENST00000585941 ETDCA0A1B0GVM5 59 aa9.06□□□□□ -0.96
LIG3-205ENST00000585941 RPL37AP8A6NKH3 93 aa9.06□□□□□ -0.96
LIG3-205ENST00000585941 GAGE2AQ6NT46 116 aa9.06□□□□□ -0.96
LIG3-205ENST00000585941 IGKV2-24A0A0C4DH68 120 aa9.05□□□□□ -0.96
LIG3-205ENST00000585941 Q6ZRX8 168 aa9.05□□□□□ -0.96
LIG3-205ENST00000585941 KRTAP4-16G5E9R7 235 aaPredicted RBP9.04□□□□□ -0.96
LIG3-205ENST00000585941 LAMTOR3Q9UHA4 124 aa9.04□□□□□ -0.96
LIG3-205ENST00000585941 STARD9Q9P2P6 4700 aa9.04□□□□□ -0.96
LIG3-205ENST00000585941 B5MCH6 92 aa9.04□□□□□ -0.96
LIG3-205ENST00000585941 RBM3P98179 157 aaKnown RBP9.04□□□□□ -0.96
LIG3-205ENST00000585941 DNAH10Q8IVF4 4471 aa9.03□□□□□ -0.96
LIG3-205ENST00000585941 A0A087WTM6 91 aa9.03□□□□□ -0.96
LIG3-205ENST00000585941 MT-ATP8P03928 68 aa9.03□□□□□ -0.96
LIG3-205ENST00000585941 CCKP06307 115 aa9.03□□□□□ -0.96
LIG3-205ENST00000585941 PDE6GP18545 87 aa9.03□□□□□ -0.96
LIG3-205ENST00000585941 C21orf62-AS1Q17RA5 79 aa9.02□□□□□ -0.97
LIG3-205ENST00000585941 REG3GQ6UW15 175 aa9.02□□□□□ -0.97
LIG3-205ENST00000585941 SDIM1Q6ZPB5 146 aa9.02□□□□□ -0.97
LIG3-205ENST00000585941 PCP4P48539 62 aa9.01□□□□□ -0.97
LIG3-205ENST00000585941 LOC110117498A0A087WWA1 95 aa9□□□□□ -0.97
LIG3-205ENST00000585941 A0A1W2PNN7 141 aa9□□□□□ -0.97
LIG3-205ENST00000585941 C1orf134Q5TEV5 83 aa9□□□□□ -0.97
LIG3-205ENST00000585941 LINC00643Q86TS7 51 aa9□□□□□ -0.97
LIG3-205ENST00000585941 DSCR8Q96T75 97 aa9□□□□□ -0.97
LIG3-205ENST00000585941 LY6G6CO95867 125 aa8.98□□□□□ -0.97
LIG3-205ENST00000585941 NDUFV3P56181 108 aaKnown RBP8.98□□□□□ -0.97
LIG3-205ENST00000585941 A0A1B0GV72 72 aa8.97□□□□□ -0.97
LIG3-205ENST00000585941 C3orf84H3BNL1 204 aa8.97□□□□□ -0.97
LIG3-205ENST00000585941 LINC00476Q8WZB0 136 aa8.97□□□□□ -0.97
LIG3-205ENST00000585941 Q6Q795 121 aa8.97□□□□□ -0.97
LIG3-205ENST00000585941 Q6ZQT0 140 aa8.97□□□□□ -0.97
LIG3-205ENST00000585941 Q9BRP9 147 aa8.97□□□□□ -0.97
LIG3-205ENST00000585941 CHTF8P0CG12 524 aa8.96□□□□□ -0.98
LIG3-205ENST00000585941 UBE2BP63146 152 aa8.95□□□□□ -0.98
LIG3-205ENST00000585941 SMCR5Q8TEV8 140 aa8.94□□□□□ -0.98
LIG3-205ENST00000585941 TGP01266 2768 aa8.94□□□□□ -0.98
LIG3-205ENST00000585941 TRBV7-7A0A0K0K1E9 115 aa8.94□□□□□ -0.98
LIG3-205ENST00000585941 IMUPQ9GZP8 106 aa8.94□□□□□ -0.98
LIG3-205ENST00000585941 IGLV5-48A0A075B6I7 105 aa8.93□□□□□ -0.98
LIG3-205ENST00000585941 TRBV7-4A0A0J9YYF1 115 aa8.93□□□□□ -0.98
LIG3-205ENST00000585941 RTL8CO15255 209 aa8.93□□□□□ -0.98
LIG3-205ENST00000585941 Q8N377 158 aa8.93□□□□□ -0.98
LIG3-205ENST00000585941 SPACA4Q8TDM5 124 aa8.93□□□□□ -0.98
LIG3-205ENST00000585941 LINC00846Q9NV44 126 aa8.93□□□□□ -0.98
LIG3-205ENST00000585941 EPM2AB3EWF7 344 aa8.92□□□□□ -0.98
LIG3-205ENST00000585941 H0Y9J4 135 aa8.92□□□□□ -0.98
LIG3-205ENST00000585941 PHF5AQ7RTV0 110 aaKnown RBP8.92□□□□□ -0.98
LIG3-205ENST00000585941 DPH3Q96FX2 82 aa8.92□□□□□ -0.98
LIG3-205ENST00000585941 LINC01547P58512 204 aaPredicted RBP8.91□□□□□ -0.98
LIG3-205ENST00000585941 FAM19A1Q7Z5A9 133 aa8.91□□□□□ -0.98
LIG3-205ENST00000585941 DEFB105AQ8NG35 78 aa8.91□□□□□ -0.98
LIG3-205ENST00000585941 DNAH6Q9C0G6 4158 aa8.91□□□□□ -0.98
LIG3-205ENST00000585941 Q6JHZ5 121 aa8.89□□□□□ -0.99
LIG3-205ENST00000585941 UBL5Q9BZL1 73 aa8.89□□□□□ -0.99
LIG3-205ENST00000585941 IGLV5-52A0A0A0MRZ9 124 aa8.88□□□□□ -0.99
LIG3-205ENST00000585941 ERC2-IT1O76042 136 aa8.88□□□□□ -0.99
LIG3-205ENST00000585941 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.88□□□□□ -0.99
LIG3-205ENST00000585941 PANO1I0J062 215 aa8.87□□□□□ -0.99
LIG3-205ENST00000585941 ATP5EP2Q5VTU8 51 aa8.87□□□□□ -0.99
LIG3-205ENST00000585941 ST20-AS1Q8NBB2 130 aa8.86□□□□□ -0.99
LIG3-205ENST00000585941 ALMS1Q8TCU4 4167 aa8.85□□□□□ -0.99
LIG3-205ENST00000585941 BCE1O60756 84 aa8.85□□□□□ -0.99
LIG3-205ENST00000585941 PRLHP81277 87 aa8.85□□□□□ -0.99
LIG3-205ENST00000585941 HIGD2AQ9BW72 106 aa8.85□□□□□ -0.99
LIG3-205ENST00000585941 A0A1B0GW54 56 aa8.84□□□□□ -0.99
LIG3-205ENST00000585941 UBE2AP49459 152 aa8.84□□□□□ -0.99
LIG3-205ENST00000585941 KRTAP11-1Q8IUC1 163 aa8.84□□□□□ -0.99
LIG3-205ENST00000585941 PLAC8Q9NZF1 115 aa8.84□□□□□ -0.99
LIG3-205ENST00000585941 KMT2AQ03164 3969 aa8.84□□□□□ -0.99
LIG3-205ENST00000585941 TNP2Q05952 138 aa8.83□□□□□ -1
LIG3-205ENST00000585941 DNAH17Q9UFH2 4485 aa8.82□□□□□ -1
LIG3-205ENST00000585941 F8WEM9 126 aa8.82□□□□□ -1
LIG3-205ENST00000585941 DNAH2Q9P225 4427 aa8.82□□□□□ -1
LIG3-205ENST00000585941 FUSP35637 526 aaKnown RBP eCLIP8.8□□□□□ -1
LIG3-205ENST00000585941 SPRR1BP22528 89 aa8.79□□□□□ -1
LIG3-205ENST00000585941 C1orf137Q5JT78 98 aa8.79□□□□□ -1
LIG3-205ENST00000585941 Q6ZVQ6 151 aa8.79□□□□□ -1
LIG3-205ENST00000585941 KRTAP13-1Q8IUC0 172 aa8.79□□□□□ -1
LIG3-205ENST00000585941 C3orf22Q8N5N4 141 aa8.79□□□□□ -1
LIG3-205ENST00000585941 IGKV3D-7A0A0C4DH55 119 aa8.78□□□□□ -1
LIG3-205ENST00000585941 SMIM29Q86T20 159 aa8.78□□□□□ -1
LIG3-205ENST00000585941 HECTD4Q9Y4D8 3996 aa8.77□□□□□ -1.01
LIG3-205ENST00000585941 IGLV8-61A0A075B6I0 122 aa8.77□□□□□ -1.01
LIG3-205ENST00000585941 ANAPC13Q9BS18 74 aa8.76□□□□□ -1.01
LIG3-205ENST00000585941 CXCL6P80162 114 aa8.75□□□□□ -1.01
LIG3-205ENST00000585941 Q8NBF4 154 aa8.75□□□□□ -1.01
LIG3-205ENST00000585941 FAM236AA0A1B0GUQ0 79 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms