RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 TRAV23DV6A0A075B6W5 121 aa9.65□□□□□ -0.86
CIITA-206ENST00000571190 TRGC2P03986 189 aa9.65□□□□□ -0.86
CIITA-206ENST00000571190 NMUP48645 174 aa9.65□□□□□ -0.86
CIITA-206ENST00000571190 KRTAP19-2Q3LHN2 52 aa9.65□□□□□ -0.86
CIITA-206ENST00000571190 S100A7L2Q5SY68 101 aa9.65□□□□□ -0.86
CIITA-206ENST00000571190 ADAMTSL4-AS1Q5T5F5 129 aa9.65□□□□□ -0.86
CIITA-206ENST00000571190 ZNF73O43830 326 aaPredicted RBP9.64□□□□□ -0.87
CIITA-206ENST00000571190 DPM2O94777 84 aa9.64□□□□□ -0.87
CIITA-206ENST00000571190 C9orf153Q5TBE3 101 aa9.64□□□□□ -0.87
CIITA-206ENST00000571190 MIEN1Q9BRT3 115 aa9.64□□□□□ -0.87
CIITA-206ENST00000571190 LGALS3P17931 250 aaKnown RBP9.63□□□□□ -0.87
CIITA-206ENST00000571190 JOSD1Q15040 202 aaPredicted RBP9.63□□□□□ -0.87
CIITA-206ENST00000571190 NPC2P61916 151 aa9.62□□□□□ -0.87
CIITA-206ENST00000571190 A0A0J9YXY3 114 aa9.61□□□□□ -0.87
CIITA-206ENST00000571190 COLCA2A8K830 154 aa9.61□□□□□ -0.87
CIITA-206ENST00000571190 IGKCP01834 107 aa9.61□□□□□ -0.87
CIITA-206ENST00000571190 FABP4P15090 132 aa9.61□□□□□ -0.87
CIITA-206ENST00000571190 HERVK_113P61574 105 aa9.61□□□□□ -0.87
CIITA-206ENST00000571190 C5orf52A6NGY3 159 aa9.59□□□□□ -0.87
CIITA-206ENST00000571190 SPRR1BP22528 89 aa9.59□□□□□ -0.87
CIITA-206ENST00000571190 HSPB8Q9UJY1 196 aa9.59□□□□□ -0.87
CIITA-206ENST00000571190 LITAFQ99732 161 aa9.57□□□□□ -0.88
CIITA-206ENST00000571190 E9PLD3 99 aa9.56□□□□□ -0.88
CIITA-206ENST00000571190 CRCT1Q9UGL9 99 aa9.56□□□□□ -0.88
CIITA-206ENST00000571190 MT1HP80294 61 aa9.55□□□□□ -0.88
CIITA-206ENST00000571190 PCOTHQ58A44 107 aa9.55□□□□□ -0.88
CIITA-206ENST00000571190 HRCT1Q6UXD1 115 aa9.54□□□□□ -0.88
CIITA-206ENST00000571190 LINC00308Q8TCZ7 52 aa9.53□□□□□ -0.88
CIITA-206ENST00000571190 HINT1P49773 126 aaPredicted RBP9.52□□□□□ -0.89
CIITA-206ENST00000571190 SPANXCQ9NY87 97 aa9.52□□□□□ -0.89
CIITA-206ENST00000571190 C9orf92A6NGG3 77 aa9.51□□□□□ -0.89
CIITA-206ENST00000571190 LIMD2Q9BT23 127 aa9.51□□□□□ -0.89
CIITA-206ENST00000571190 IGLV8-61A0A075B6I0 122 aa9.5□□□□□ -0.89
CIITA-206ENST00000571190 OR13C6PQ8NH95 151 aa9.5□□□□□ -0.89
CIITA-206ENST00000571190 DHRS4-AS1Q9P1J3 65 aa9.5□□□□□ -0.89
CIITA-206ENST00000571190 CBY1Q9Y3M2 126 aa9.5□□□□□ -0.89
CIITA-206ENST00000571190 FSIP2Q5CZC0 6907 aa9.5□□□□□ -0.89
CIITA-206ENST00000571190 SLC25A34Q6PIV7 304 aa9.49□□□□□ -0.89
CIITA-206ENST00000571190 LAMTOR3Q9UHA4 124 aa9.49□□□□□ -0.89
CIITA-206ENST00000571190 TIMM17BO60830 172 aa9.48□□□□□ -0.89
CIITA-206ENST00000571190 ELOF1P60002 83 aaKnown RBP9.48□□□□□ -0.89
CIITA-206ENST00000571190 SPANXDQ9BXN6 97 aa9.47□□□□□ -0.89
CIITA-206ENST00000571190 SYS1-DBNDD2H3BUS1 97 aa9.46□□□□□ -0.9
CIITA-206ENST00000571190 COX7BP24311 80 aa9.45□□□□□ -0.9
CIITA-206ENST00000571190 CD164Q04900 197 aa9.45□□□□□ -0.9
CIITA-206ENST00000571190 Q1RN00 199 aa9.45□□□□□ -0.9
CIITA-206ENST00000571190 C6orf99Q4VX62 202 aa9.45□□□□□ -0.9
CIITA-206ENST00000571190 TTTY13Q9BZ97 58 aa9.45□□□□□ -0.9
CIITA-206ENST00000571190 SMIM29Q86T20 159 aa9.43□□□□□ -0.9
CIITA-206ENST00000571190 DEFB105AQ8NG35 78 aa9.43□□□□□ -0.9
CIITA-206ENST00000571190 H7C2G1 150 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BKO60814 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BJP06899 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 LORP23490 312 aaPredicted RBP9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BOP23527 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BBP33778 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BDP58876 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BCP62807 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 TAL2Q16559 108 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST2H2BEQ16778 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.42□□□□□ -0.9
CIITA-206ENST00000571190 LINC01545Q5VT33 79 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BHQ93079 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BNQ99877 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 HIST1H2BMQ99879 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 PRO1933Q9H354 126 aa9.42□□□□□ -0.9
CIITA-206ENST00000571190 ZNF815PA8K554 130 aa9.41□□□□□ -0.9
CIITA-206ENST00000571190 C1orf195Q5TG92 126 aa9.41□□□□□ -0.9
CIITA-206ENST00000571190 Q5XG85 94 aa9.41□□□□□ -0.9
CIITA-206ENST00000571190 TMA7Q9Y2S6 64 aaKnown RBP9.41□□□□□ -0.9
CIITA-206ENST00000571190 A0A0G2JQZ4 141 aa9.4□□□□□ -0.9
CIITA-206ENST00000571190 TEX49A0A1B0GTD5 131 aa9.4□□□□□ -0.9
CIITA-206ENST00000571190 CFC1BP0CG36 223 aa9.4□□□□□ -0.9
CIITA-206ENST00000571190 KRTAP10-6P60371 365 aaPredicted RBP9.4□□□□□ -0.9
CIITA-206ENST00000571190 LINC00518Q8N0U6 118 aa9.4□□□□□ -0.9
CIITA-206ENST00000571190 TRBV7-6A0A0J9YX20 115 aa9.37□□□□□ -0.91
CIITA-206ENST00000571190 PET117Q6UWS5 81 aa9.37□□□□□ -0.91
CIITA-206ENST00000571190 IGLV5-48A0A075B6I7 105 aa9.36□□□□□ -0.91
CIITA-206ENST00000571190 AKR1D1P51857 326 aa9.36□□□□□ -0.91
CIITA-206ENST00000571190 RPL37P61927 97 aaKnown RBP9.34□□□□□ -0.91
CIITA-206ENST00000571190 A0A1B0GWB2 263 aa9.33□□□□□ -0.92
CIITA-206ENST00000571190 C3orf79P0CE67 100 aa9.33□□□□□ -0.92
CIITA-206ENST00000571190 S100A6P06703 90 aa9.3□□□□□ -0.92
CIITA-206ENST00000571190 A6NDN8 102 aa9.29□□□□□ -0.92
CIITA-206ENST00000571190 COA6Q5JTJ3 125 aaKnown RBP9.29□□□□□ -0.92
CIITA-206ENST00000571190 IFITM1P13164 125 aa9.28□□□□□ -0.92
CIITA-206ENST00000571190 SNRPEP62304 92 aaKnown RBP9.28□□□□□ -0.92
CIITA-206ENST00000571190 ANKRD39Q53RE8 183 aa9.28□□□□□ -0.92
CIITA-206ENST00000571190 SCGB1D4Q6XE38 83 aa9.28□□□□□ -0.92
CIITA-206ENST00000571190 MUSTN1Q8IVN3 82 aa9.27□□□□□ -0.93
CIITA-206ENST00000571190 HIST3H2BBQ8N257 126 aa9.26□□□□□ -0.93
CIITA-206ENST00000571190 M0R2T5 61 aa9.25□□□□□ -0.93
CIITA-206ENST00000571190 KRTDAPP60985 99 aa9.25□□□□□ -0.93
CIITA-206ENST00000571190 SMIM11BQ8TCY0 68 aa9.25□□□□□ -0.93
CIITA-206ENST00000571190 A4D1N5 150 aa9.24□□□□□ -0.93
CIITA-206ENST00000571190 COX6B2Q6YFQ2 88 aa9.23□□□□□ -0.93
CIITA-206ENST00000571190 Q6ZVH6 145 aa9.23□□□□□ -0.93
CIITA-206ENST00000571190 PCP2Q8IVA1 136 aa9.23□□□□□ -0.93
CIITA-206ENST00000571190 COPS9Q8WXC6 57 aa9.23□□□□□ -0.93
CIITA-206ENST00000571190 FLGP20930 4061 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms