RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 Q6ZRN7 208 aaPredicted RBP5.17□□□□□ -1.58
VPS39-213ENST00000570062 C9orf163Q8N9P6 203 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 LINC00476Q8WZB0 136 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 DIRC1Q969H9 104 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 COL7A1Q02388 2944 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 DNAH1Q9P2D7 4330 aa5.17□□□□□ -1.58
VPS39-213ENST00000570062 SACSQ9NZJ4 4579 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 C9JAW5 83 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 LECT2O14960 151 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 SLPIP03973 132 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 GAGE2BQ13066 116 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 OCIAD2Q56VL3 154 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 ANKRD29Q8N6D5 301 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 Q8N814 137 aa5.16□□□□□ -1.58
VPS39-213ENST00000570062 INAFM2P0DMQ5 153 aa5.15□□□□□ -1.59
VPS39-213ENST00000570062 C6orf99Q4VX62 202 aa5.15□□□□□ -1.59
VPS39-213ENST00000570062 C9orf129Q5T035 196 aaKnown RBP5.15□□□□□ -1.59
VPS39-213ENST00000570062 Q8N1X5 172 aa5.15□□□□□ -1.59
VPS39-213ENST00000570062 KCNQ1DNQ9H478 68 aa5.15□□□□□ -1.59
VPS39-213ENST00000570062 DNAH7Q8WXX0 4024 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 VPS13DQ5THJ4 4388 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 A0A087WTM6 91 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 TMEM256-PLSCR3K7ERE1 68 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 M0R2N4 97 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 ZNF73O43830 326 aaPredicted RBP5.14□□□□□ -1.59
VPS39-213ENST00000570062 PRR3P79522 188 aaKnown RBP5.14□□□□□ -1.59
VPS39-213ENST00000570062 C21orf62-AS1Q17RA5 79 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 TEN1Q86WV5 123 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 PRO0461Q9UI25 63 aa5.14□□□□□ -1.59
VPS39-213ENST00000570062 TENM2Q9NT68 2774 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 TRBV10-3A0A0K0K1G6 114 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 hADV29S1A0JD25 119 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 PRYO14603 147 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 COX7BP24311 80 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 WFDC2Q14508 124 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 CLEC2BQ92478 149 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 ORMDL1Q9P0S3 153 aa5.13□□□□□ -1.59
VPS39-213ENST00000570062 LYSTQ99698 3801 aa5.12□□□□□ -1.59
VPS39-213ENST00000570062 BAALC-AS2P0C853 105 aa5.12□□□□□ -1.59
VPS39-213ENST00000570062 LINC00575Q6W349 94 aa5.12□□□□□ -1.59
VPS39-213ENST00000570062 MRPL55Q7Z7F7 128 aaKnown RBP5.12□□□□□ -1.59
VPS39-213ENST00000570062 PPDPFLQ8WWR9 84 aa5.12□□□□□ -1.59
VPS39-213ENST00000570062 C22orf24Q9Y442 160 aa5.12□□□□□ -1.59
VPS39-213ENST00000570062 IGLV1-50A0A075B6I6 118 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.11□□□□□ -1.59
VPS39-213ENST00000570062 ELOF1P60002 83 aaKnown RBP5.11□□□□□ -1.59
VPS39-213ENST00000570062 ETDBQ3ZM63 59 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.11□□□□□ -1.59
VPS39-213ENST00000570062 SDIM1Q6ZPB5 146 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 C7orf33Q8WU49 177 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 LINC00167Q96N53 147 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 DHRS4-AS1Q9P1J3 65 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 STARD9Q9P2P6 4700 aa5.11□□□□□ -1.59
VPS39-213ENST00000570062 JMJD7-PLA2G4BH0Y9G9 81 aa5.1□□□□□ -1.59
VPS39-213ENST00000570062 Q8NDZ9 215 aa5.1□□□□□ -1.59
VPS39-213ENST00000570062 DPH3Q96FX2 82 aa5.1□□□□□ -1.59
VPS39-213ENST00000570062 A0A087WYN8 130 aa5.09□□□□□ -1.59
VPS39-213ENST00000570062 A0A096LNI7 61 aa5.09□□□□□ -1.59
VPS39-213ENST00000570062 ETDCA0A1B0GVM5 59 aa5.09□□□□□ -1.59
VPS39-213ENST00000570062 SPRR1AP35321 89 aa5.09□□□□□ -1.59
VPS39-213ENST00000570062 SERTAD4-AS1Q5TG53 156 aa5.09□□□□□ -1.59
VPS39-213ENST00000570062 CSMD3Q7Z407 3707 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 IGLV5-52A0A0A0MRZ9 124 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 IGKV2-24A0A0C4DH68 120 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 RTL8CO15255 209 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 ACYP1P07311 99 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 LINC00336Q6ZUF6 198 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 FAM19A5Q7Z5A7 132 aaPredicted RBP5.08□□□□□ -1.6
VPS39-213ENST00000570062 FAM218AQ96MZ4 157 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 UBR4Q5T4S7 5183 aa5.08□□□□□ -1.6
VPS39-213ENST00000570062 EPM2AB3EWF7 344 aa5.07□□□□□ -1.6
VPS39-213ENST00000570062 H0Y9J4 135 aa5.07□□□□□ -1.6
VPS39-213ENST00000570062 PDE6GP18545 87 aa5.07□□□□□ -1.6
VPS39-213ENST00000570062 REG3GQ6UW15 175 aa5.07□□□□□ -1.6
VPS39-213ENST00000570062 UBE2BP63146 152 aa5.06□□□□□ -1.6
VPS39-213ENST00000570062 Q6ZRX8 168 aa5.06□□□□□ -1.6
VPS39-213ENST00000570062 MTURNQ8N3F0 131 aa5.06□□□□□ -1.6
VPS39-213ENST00000570062 SPACA4Q8TDM5 124 aa5.06□□□□□ -1.6
VPS39-213ENST00000570062 LCE6AA0A183 80 aa5.05□□□□□ -1.6
VPS39-213ENST00000570062 FAM240AA0A1B0GVK7 77 aa5.05□□□□□ -1.6
VPS39-213ENST00000570062 A0A1W2PNN7 141 aa5.05□□□□□ -1.6
VPS39-213ENST00000570062 FAM168BA1KXE4 195 aa5.05□□□□□ -1.6
VPS39-213ENST00000570062 B5MCH6 92 aa5.05□□□□□ -1.6
VPS39-213ENST00000570062 RPL37AP8A6NKH3 93 aa5.04□□□□□ -1.6
VPS39-213ENST00000570062 KRTAP4-16G5E9R7 235 aaPredicted RBP5.04□□□□□ -1.6
VPS39-213ENST00000570062 Q6ZQY7 126 aa5.04□□□□□ -1.6
VPS39-213ENST00000570062 KRTAP7-1Q8IUC3 87 aa5.03□□□□□ -1.6
VPS39-213ENST00000570062 OBSCN-AS1Q96MR7 158 aa5.03□□□□□ -1.6
VPS39-213ENST00000570062 PLAC8Q9NZF1 115 aa5.03□□□□□ -1.6
VPS39-213ENST00000570062 FRAS1Q86XX4 4008 aa5.03□□□□□ -1.6
VPS39-213ENST00000570062 DNAH6Q9C0G6 4158 aa5.03□□□□□ -1.6
VPS39-213ENST00000570062 ABCA13Q86UQ4 5058 aa5.02□□□□□ -1.61
VPS39-213ENST00000570062 ALMS1Q8TCU4 4167 aa5.02□□□□□ -1.61
VPS39-213ENST00000570062 TEX49A0A1B0GTD5 131 aa5.02□□□□□ -1.61
VPS39-213ENST00000570062 BCE1O60756 84 aa5.02□□□□□ -1.61
VPS39-213ENST00000570062 RBM3P98179 157 aaKnown RBP5.02□□□□□ -1.61
VPS39-213ENST00000570062 DSCR8Q96T75 97 aa5.02□□□□□ -1.61
VPS39-213ENST00000570062 LAMTOR3Q9UHA4 124 aa5.02□□□□□ -1.61
VPS39-213ENST00000570062 DNAH10Q8IVF4 4471 aa5.01□□□□□ -1.61
VPS39-213ENST00000570062 A0A1B0GW54 56 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms