RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LOC110117498A0A087WWA1 95 aa8.9□□□□□ -0.98
VPS4A-204ENST00000566354 Q6ZQT0 140 aa8.9□□□□□ -0.98
VPS4A-204ENST00000566354 H3BQ85 93 aa8.89□□□□□ -0.99
VPS4A-204ENST00000566354 ENHOQ6UWT2 76 aa8.89□□□□□ -0.99
VPS4A-204ENST00000566354 PRR34Q9NV39 138 aa8.89□□□□□ -0.99
VPS4A-204ENST00000566354 HUWE1Q7Z6Z7 4374 aaKnown RBP8.89□□□□□ -0.99
VPS4A-204ENST00000566354 TNP2Q05952 138 aa8.88□□□□□ -0.99
VPS4A-204ENST00000566354 MEGF8Q7Z7M0 2845 aa8.88□□□□□ -0.99
VPS4A-204ENST00000566354 GVQW2A0A096LPI5 108 aaPredicted RBP8.88□□□□□ -0.99
VPS4A-204ENST00000566354 SPART-AS1P0CW21 52 aa8.88□□□□□ -0.99
VPS4A-204ENST00000566354 TM2D3Q9BRN9 247 aa8.87□□□□□ -0.99
VPS4A-204ENST00000566354 TRAV7A0A075B6U4 112 aa8.87□□□□□ -0.99
VPS4A-204ENST00000566354 KLK12Q9UKR0 248 aa8.87□□□□□ -0.99
VPS4A-204ENST00000566354 TRAV23DV6A0A075B6W5 121 aa8.86□□□□□ -0.99
VPS4A-204ENST00000566354 PDE6GP18545 87 aa8.86□□□□□ -0.99
VPS4A-204ENST00000566354 STAB2Q8WWQ8 2551 aa8.86□□□□□ -0.99
VPS4A-204ENST00000566354 DNAH9Q9NYC9 4486 aa8.86□□□□□ -0.99
VPS4A-204ENST00000566354 Q6ZQY7 126 aa8.85□□□□□ -0.99
VPS4A-204ENST00000566354 HTN3P15516 51 aa8.85□□□□□ -0.99
VPS4A-204ENST00000566354 DIRC1Q969H9 104 aa8.83□□□□□ -1
VPS4A-204ENST00000566354 PRKDCP78527 4128 aaKnown RBP8.83□□□□□ -1
VPS4A-204ENST00000566354 C6orf48Q9UBA6 75 aa8.83□□□□□ -1
VPS4A-204ENST00000566354 C20orf197Q8N268 126 aa8.82□□□□□ -1
VPS4A-204ENST00000566354 LINC01547P58512 204 aaPredicted RBP8.82□□□□□ -1
VPS4A-204ENST00000566354 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.81□□□□□ -1
VPS4A-204ENST00000566354 Q6ZTC4 211 aa8.81□□□□□ -1
VPS4A-204ENST00000566354 Q6ZVQ6 151 aa8.81□□□□□ -1
VPS4A-204ENST00000566354 XAGE1AQ9HD64 81 aa8.81□□□□□ -1
VPS4A-204ENST00000566354 M0R2N4 97 aa8.8□□□□□ -1
VPS4A-204ENST00000566354 ZNF73O43830 326 aaPredicted RBP8.8□□□□□ -1
VPS4A-204ENST00000566354 B9D2Q9BPU9 175 aa8.8□□□□□ -1
VPS4A-204ENST00000566354 HAMPP81172 84 aa8.8□□□□□ -1
VPS4A-204ENST00000566354 C11orf45Q8TAV5 145 aa8.8□□□□□ -1
VPS4A-204ENST00000566354 COX7BP24311 80 aa8.79□□□□□ -1
VPS4A-204ENST00000566354 CXCL6P80162 114 aa8.79□□□□□ -1
VPS4A-204ENST00000566354 ELOF1P60002 83 aaKnown RBP8.78□□□□□ -1
VPS4A-204ENST00000566354 TRBV7-4A0A0J9YYF1 115 aa8.77□□□□□ -1
VPS4A-204ENST00000566354 LINC00528Q8N1L1 170 aa8.77□□□□□ -1.01
VPS4A-204ENST00000566354 CAMK2N2Q96S95 79 aa8.76□□□□□ -1.01
VPS4A-204ENST00000566354 VPREB1P12018 145 aa8.76□□□□□ -1.01
VPS4A-204ENST00000566354 M0R378 163 aa8.75□□□□□ -1.01
VPS4A-204ENST00000566354 LINC00474Q9P2X8 69 aa8.75□□□□□ -1.01
VPS4A-204ENST00000566354 DEFB131BA0A096LNP1 70 aa8.74□□□□□ -1.01
VPS4A-204ENST00000566354 H3BNG1 76 aa8.74□□□□□ -1.01
VPS4A-204ENST00000566354 HIGD2BQ4VC39 106 aa8.74□□□□□ -1.01
VPS4A-204ENST00000566354 FBN3Q75N90 2809 aa8.73□□□□□ -1.01
VPS4A-204ENST00000566354 ERC2-IT1O76042 136 aa8.73□□□□□ -1.01
VPS4A-204ENST00000566354 KTN1-AS1Q86SY8 53 aa8.73□□□□□ -1.01
VPS4A-204ENST00000566354 KRTAP26-1Q6PEX3 210 aa8.72□□□□□ -1.01
VPS4A-204ENST00000566354 WFDC10BQ8IUB3 73 aa8.72□□□□□ -1.01
VPS4A-204ENST00000566354 TRAV10A0A0B4J240 114 aa8.71□□□□□ -1.01
VPS4A-204ENST00000566354 NDUFS5O43920 106 aa8.71□□□□□ -1.01
VPS4A-204ENST00000566354 ESRGQ1W209 222 aa8.71□□□□□ -1.01
VPS4A-204ENST00000566354 RBM12B-AS1Q9P1G2 102 aa8.71□□□□□ -1.02
VPS4A-204ENST00000566354 F8WEM9 126 aa8.7□□□□□ -1.02
VPS4A-204ENST00000566354 Q1T7F1 81 aa8.7□□□□□ -1.02
VPS4A-204ENST00000566354 C15orf56Q8N910 161 aa8.69□□□□□ -1.02
VPS4A-204ENST00000566354 TGP01266 2768 aa8.68□□□□□ -1.02
VPS4A-204ENST00000566354 SCXQ7RTU7 201 aa8.66□□□□□ -1.02
VPS4A-204ENST00000566354 CSMD3Q7Z407 3707 aa8.66□□□□□ -1.02
VPS4A-204ENST00000566354 Q6ZRP5 223 aa8.65□□□□□ -1.02
VPS4A-204ENST00000566354 TENM2Q9NT68 2774 aa8.64□□□□□ -1.03
VPS4A-204ENST00000566354 KCNQ1DNQ9H478 68 aa8.63□□□□□ -1.03
VPS4A-204ENST00000566354 SYCNQ0VAF6 134 aa8.63□□□□□ -1.03
VPS4A-204ENST00000566354 SNURFQ9Y675 71 aa8.63□□□□□ -1.03
VPS4A-204ENST00000566354 UBE2BP63146 152 aa8.62□□□□□ -1.03
VPS4A-204ENST00000566354 LINC01556Q5JQF7 62 aa8.62□□□□□ -1.03
VPS4A-204ENST00000566354 RMI2Q96E14 147 aa8.62□□□□□ -1.03
VPS4A-204ENST00000566354 IGKV2D-24A0A075B6R9 120 aa8.61□□□□□ -1.03
VPS4A-204ENST00000566354 NREPQ16612 68 aa8.61□□□□□ -1.03
VPS4A-204ENST00000566354 NKAPP1Q8N9T2 125 aa8.61□□□□□ -1.03
VPS4A-204ENST00000566354 DNAH7Q8WXX0 4024 aa8.61□□□□□ -1.03
VPS4A-204ENST00000566354 BPY2O14599 106 aa8.6□□□□□ -1.03
VPS4A-204ENST00000566354 MPLKIPQ8TAP9 179 aa8.6□□□□□ -1.03
VPS4A-204ENST00000566354 PHF5AQ7RTV0 110 aaKnown RBP8.6□□□□□ -1.03
VPS4A-204ENST00000566354 LINC00588Q9Y4M8 146 aa8.6□□□□□ -1.03
VPS4A-204ENST00000566354 LYSTQ99698 3801 aa8.6□□□□□ -1.03
VPS4A-204ENST00000566354 C7orf33Q8WU49 177 aa8.58□□□□□ -1.04
VPS4A-204ENST00000566354 DYNC2H1Q8NCM8 4307 aaKnown RBP8.58□□□□□ -1.04
VPS4A-204ENST00000566354 IGLV5-48A0A075B6I7 105 aa8.58□□□□□ -1.04
VPS4A-204ENST00000566354 IGKV4-1P06312 121 aa8.58□□□□□ -1.04
VPS4A-204ENST00000566354 Q8N377 158 aa8.58□□□□□ -1.04
VPS4A-204ENST00000566354 STARD9Q9P2P6 4700 aa8.57□□□□□ -1.04
VPS4A-204ENST00000566354 PLECQ15149 4684 aaKnown RBP8.57□□□□□ -1.04
VPS4A-204ENST00000566354 A0A1B0GW54 56 aa8.57□□□□□ -1.04
VPS4A-204ENST00000566354 SERTAD4-AS1Q5TG53 156 aa8.57□□□□□ -1.04
VPS4A-204ENST00000566354 DEFB105AQ8NG35 78 aa8.57□□□□□ -1.04
VPS4A-204ENST00000566354 DHRS4-AS1Q9P1J3 65 aa8.57□□□□□ -1.04
VPS4A-204ENST00000566354 TLX1NBP0CAT3 122 aa8.56□□□□□ -1.04
VPS4A-204ENST00000566354 FAM229BQ4G0N7 80 aa8.56□□□□□ -1.04
VPS4A-204ENST00000566354 Q8N9L7 120 aa8.56□□□□□ -1.04
VPS4A-204ENST00000566354 TMEM254Q8TBM7 123 aa8.56□□□□□ -1.04
VPS4A-204ENST00000566354 PLA2G2DQ9UNK4 145 aa8.56□□□□□ -1.04
VPS4A-204ENST00000566354 H3BS24 57 aa8.55□□□□□ -1.04
VPS4A-204ENST00000566354 C3orf84H3BNL1 204 aa8.54□□□□□ -1.04
VPS4A-204ENST00000566354 DNAH10OSP0CZ25 163 aa8.54□□□□□ -1.04
VPS4A-204ENST00000566354 Q6ZRX8 168 aa8.54□□□□□ -1.04
VPS4A-204ENST00000566354 APLNQ9ULZ1 77 aa8.54□□□□□ -1.04
VPS4A-204ENST00000566354 FUSP35637 526 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS4A-204ENST00000566354 OCR1Q9BZK8 76 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms