RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 JMJD7-PLA2G4BH0Y9G9 81 aa11.5□□□□□ -0.57
SNX1-208ENST00000559844 IGLV5-37A0A075B6J1 123 aa11.48□□□□□ -0.57
SNX1-208ENST00000559844 RTL8CO15255 209 aa11.48□□□□□ -0.57
SNX1-208ENST00000559844 GHRHP01286 108 aa11.47□□□□□ -0.57
SNX1-208ENST00000559844 C14orf177Q52M58 125 aa11.47□□□□□ -0.57
SNX1-208ENST00000559844 SERTAD4-AS1Q5TG53 156 aa11.47□□□□□ -0.57
SNX1-208ENST00000559844 C14orf132Q9NPU4 83 aa11.47□□□□□ -0.57
SNX1-208ENST00000559844 GAGE2BQ13066 116 aa11.46□□□□□ -0.58
SNX1-208ENST00000559844 GAGE2AQ6NT46 116 aa11.46□□□□□ -0.58
SNX1-208ENST00000559844 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.46□□□□□ -0.58
SNX1-208ENST00000559844 C7orf33Q8WU49 177 aa11.46□□□□□ -0.58
SNX1-208ENST00000559844 KCNQ1DNQ9H478 68 aa11.46□□□□□ -0.58
SNX1-208ENST00000559844 DNAH10Q8IVF4 4471 aa11.46□□□□□ -0.58
SNX1-208ENST00000559844 DNAH2Q9P225 4427 aa11.45□□□□□ -0.58
SNX1-208ENST00000559844 CNBPP62633 177 aaKnown RBP11.45□□□□□ -0.58
SNX1-208ENST00000559844 Q6ZQY7 126 aa11.44□□□□□ -0.58
SNX1-208ENST00000559844 RYR3Q15413 4870 aa11.44□□□□□ -0.58
SNX1-208ENST00000559844 FRAS1Q86XX4 4008 aa11.43□□□□□ -0.58
SNX1-208ENST00000559844 C21orf62-AS1Q17RA5 79 aa11.43□□□□□ -0.58
SNX1-208ENST00000559844 LINC00528Q8N1L1 170 aa11.43□□□□□ -0.58
SNX1-208ENST00000559844 PRYO14603 147 aa11.41□□□□□ -0.58
SNX1-208ENST00000559844 TNP2Q05952 138 aa11.41□□□□□ -0.58
SNX1-208ENST00000559844 FAM168BA1KXE4 195 aa11.39□□□□□ -0.59
SNX1-208ENST00000559844 LRCOL1A6NCL2 159 aa11.39□□□□□ -0.59
SNX1-208ENST00000559844 CCKP06307 115 aa11.39□□□□□ -0.59
SNX1-208ENST00000559844 SDIM1Q6ZPB5 146 aa11.39□□□□□ -0.59
SNX1-208ENST00000559844 Q6Q795 121 aa11.39□□□□□ -0.59
SNX1-208ENST00000559844 LINC00643Q86TS7 51 aa11.39□□□□□ -0.59
SNX1-208ENST00000559844 IGLV1-50A0A075B6I6 118 aa11.38□□□□□ -0.59
SNX1-208ENST00000559844 LINC00336Q6ZUF6 198 aa11.38□□□□□ -0.59
SNX1-208ENST00000559844 LAMTOR3Q9UHA4 124 aa11.38□□□□□ -0.59
SNX1-208ENST00000559844 A0A087WTM6 91 aa11.37□□□□□ -0.59
SNX1-208ENST00000559844 C16orf90A8MZG2 172 aa11.37□□□□□ -0.59
SNX1-208ENST00000559844 A0A1B0GV72 72 aa11.37□□□□□ -0.59
SNX1-208ENST00000559844 RBM3P98179 157 aaKnown RBP11.37□□□□□ -0.59
SNX1-208ENST00000559844 MRPL55Q7Z7F7 128 aaKnown RBP11.37□□□□□ -0.59
SNX1-208ENST00000559844 PKIGQ9Y2B9 76 aa11.37□□□□□ -0.59
SNX1-208ENST00000559844 FAM19A5Q7Z5A7 132 aaPredicted RBP11.36□□□□□ -0.59
SNX1-208ENST00000559844 DNAH17Q9UFH2 4485 aa11.36□□□□□ -0.59
SNX1-208ENST00000559844 KRTAP7-1Q8IUC3 87 aa11.36□□□□□ -0.59
SNX1-208ENST00000559844 SMCR5Q8TEV8 140 aa11.35□□□□□ -0.59
SNX1-208ENST00000559844 RPL37AP8A6NKH3 93 aa11.34□□□□□ -0.59
SNX1-208ENST00000559844 SPRR1AP35321 89 aa11.34□□□□□ -0.59
SNX1-208ENST00000559844 LOC110117498A0A087WWA1 95 aa11.33□□□□□ -0.6
SNX1-208ENST00000559844 A0A096LNI7 61 aa11.33□□□□□ -0.6
SNX1-208ENST00000559844 TRBV7-7A0A0K0K1E9 115 aa11.33□□□□□ -0.6
SNX1-208ENST00000559844 DHRS4-AS1Q9P1J3 65 aa11.33□□□□□ -0.6
SNX1-208ENST00000559844 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.32□□□□□ -0.6
SNX1-208ENST00000559844 ETDCA0A1B0GVM5 59 aa11.32□□□□□ -0.6
SNX1-208ENST00000559844 PDE6GP18545 87 aa11.32□□□□□ -0.6
SNX1-208ENST00000559844 FAT2Q9NYQ8 4349 aa11.31□□□□□ -0.6
SNX1-208ENST00000559844 KRTAP4-16G5E9R7 235 aaPredicted RBP11.31□□□□□ -0.6
SNX1-208ENST00000559844 Q6ZRX8 168 aa11.31□□□□□ -0.6
SNX1-208ENST00000559844 DSCR8Q96T75 97 aa11.31□□□□□ -0.6
SNX1-208ENST00000559844 IMUPQ9GZP8 106 aa11.31□□□□□ -0.6
SNX1-208ENST00000559844 B5MCH6 92 aa11.3□□□□□ -0.6
SNX1-208ENST00000559844 Q6ZQT0 140 aa11.3□□□□□ -0.6
SNX1-208ENST00000559844 LINC00846Q9NV44 126 aa11.3□□□□□ -0.6
SNX1-208ENST00000559844 IGKV2-24A0A0C4DH68 120 aa11.29□□□□□ -0.6
SNX1-208ENST00000559844 C9orf163Q8N9P6 203 aa11.29□□□□□ -0.6
SNX1-208ENST00000559844 NDUFV3P56181 108 aaKnown RBP11.28□□□□□ -0.6
SNX1-208ENST00000559844 FUSP35637 526 aaKnown RBP eCLIP11.27□□□□□ -0.61
SNX1-208ENST00000559844 REG3GQ6UW15 175 aa11.27□□□□□ -0.61
SNX1-208ENST00000559844 A0A1B0GVY2 172 aa11.25□□□□□ -0.61
SNX1-208ENST00000559844 KRTAP10-2P60368 255 aa11.25□□□□□ -0.61
SNX1-208ENST00000559844 Q6JHZ5 121 aa11.25□□□□□ -0.61
SNX1-208ENST00000559844 A0A1W2PNN7 141 aa11.25□□□□□ -0.61
SNX1-208ENST00000559844 LINC00474Q9P2X8 69 aa11.24□□□□□ -0.61
SNX1-208ENST00000559844 TRBV7-4A0A0J9YYF1 115 aa11.23□□□□□ -0.61
SNX1-208ENST00000559844 Q9BRP9 147 aa11.23□□□□□ -0.61
SNX1-208ENST00000559844 PKD1P98161 4303 aa11.22□□□□□ -0.61
SNX1-208ENST00000559844 IGLV5-52A0A0A0MRZ9 124 aa11.22□□□□□ -0.61
SNX1-208ENST00000559844 UBL5Q9BZL1 73 aa11.21□□□□□ -0.61
SNX1-208ENST00000559844 UBE2BP63146 152 aa11.2□□□□□ -0.62
SNX1-208ENST00000559844 ATP5EP2Q5VTU8 51 aa11.19□□□□□ -0.62
SNX1-208ENST00000559844 Q8N377 158 aa11.19□□□□□ -0.62
SNX1-208ENST00000559844 DEFB105AQ8NG35 78 aa11.19□□□□□ -0.62
SNX1-208ENST00000559844 DNAH11Q96DT5 4516 aa11.19□□□□□ -0.62
SNX1-208ENST00000559844 LINC01547P58512 204 aaPredicted RBP11.19□□□□□ -0.62
SNX1-208ENST00000559844 CHTF8P0CG12 524 aa11.18□□□□□ -0.62
SNX1-208ENST00000559844 ANAPC13Q9BS18 74 aa11.18□□□□□ -0.62
SNX1-208ENST00000559844 HECTD4Q9Y4D8 3996 aa11.18□□□□□ -0.62
SNX1-208ENST00000559844 IGLV5-48A0A075B6I7 105 aa11.17□□□□□ -0.62
SNX1-208ENST00000559844 FAM19A1Q7Z5A9 133 aa11.16□□□□□ -0.62
SNX1-208ENST00000559844 PKHD1P08F94 4074 aa11.15□□□□□ -0.62
SNX1-208ENST00000559844 IGKV3D-7A0A0C4DH55 119 aa11.15□□□□□ -0.62
SNX1-208ENST00000559844 PHF5AQ7RTV0 110 aaKnown RBP11.14□□□□□ -0.63
SNX1-208ENST00000559844 ST20-AS1Q8NBB2 130 aa11.13□□□□□ -0.63
SNX1-208ENST00000559844 ERC2-IT1O76042 136 aa11.12□□□□□ -0.63
SNX1-208ENST00000559844 FAM236AA0A1B0GUQ0 79 aa11.12□□□□□ -0.63
SNX1-208ENST00000559844 FAM236BA0A1B0GV22 79 aa11.12□□□□□ -0.63
SNX1-208ENST00000559844 H0Y9J4 135 aa11.1□□□□□ -0.63
SNX1-208ENST00000559844 Q6ZVQ6 151 aa11.1□□□□□ -0.63
SNX1-208ENST00000559844 DPH3Q96FX2 82 aa11.1□□□□□ -0.63
SNX1-208ENST00000559844 DNAH5Q8TE73 4624 aa11.09□□□□□ -0.63
SNX1-208ENST00000559844 KRTAP10-1P60331 282 aa11.09□□□□□ -0.63
SNX1-208ENST00000559844 PRLHP81277 87 aa11.09□□□□□ -0.63
SNX1-208ENST00000559844 SPACA4Q8TDM5 124 aa11.09□□□□□ -0.63
SNX1-208ENST00000559844 EPM2AB3EWF7 344 aa11.07□□□□□ -0.64
SNX1-208ENST00000559844 A0A1B0GW54 56 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms