RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PRR34Q9NV39 138 aa3.62□□□□□ -1.83
LIMA1-212ENST00000552491 HTN3P15516 51 aa3.62□□□□□ -1.83
LIMA1-212ENST00000552491 LELP1Q5T871 98 aa3.62□□□□□ -1.83
LIMA1-212ENST00000552491 OTOGQ6ZRI0 2925 aa3.62□□□□□ -1.83
LIMA1-212ENST00000552491 H7BZZ5 65 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-212ENST00000552491 SCXQ7RTU7 201 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 Q8NAQ8 132 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 DIRC1Q969H9 104 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 TRBV7-4A0A0J9YYF1 115 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 FAM236DA0A1B0GTK5 79 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 FAM236CP0DP71 79 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 KLKP1Q107X0 134 aa3.61□□□□□ -1.83
LIMA1-212ENST00000552491 TRBV7-6A0A0J9YX20 115 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 ZNF73O43830 326 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-212ENST00000552491 COX7BP24311 80 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 APOC4P55056 127 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 SNURFQ9Y675 71 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 ATRQ13535 2644 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 EPM2AB3EWF7 344 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 ELOF1P60002 83 aaKnown RBP3.6□□□□□ -1.83
LIMA1-212ENST00000552491 RMI2Q96E14 147 aa3.6□□□□□ -1.83
LIMA1-212ENST00000552491 SPART-AS1P0CW21 52 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 MIFP14174 115 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 HIGD2BQ4VC39 106 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 HRCT1Q6UXD1 115 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 SERP1Q9Y6X1 66 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 TEP1Q99973 2627 aaKnown RBP3.59□□□□□ -1.83
LIMA1-212ENST00000552491 VPREB1P12018 145 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 TM2D3Q9BRN9 247 aa3.59□□□□□ -1.83
LIMA1-212ENST00000552491 KRTAP26-1Q6PEX3 210 aa3.58□□□□□ -1.84
LIMA1-212ENST00000552491 WFDC10BQ8IUB3 73 aa3.58□□□□□ -1.84
LIMA1-212ENST00000552491 Q8N9L7 120 aa3.58□□□□□ -1.84
LIMA1-212ENST00000552491 M0R378 163 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 NDUFC1O43677 76 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 EGFEM1PQ0D2K5 195 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 Q6ZRU5 148 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 NSD1Q96L73 2696 aaPredicted RBP3.57□□□□□ -1.84
LIMA1-212ENST00000552491 TENM3Q9P273 2699 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 CAMK2N2Q96S95 79 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 F8WEM9 126 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 C15orf56Q8N910 161 aa3.57□□□□□ -1.84
LIMA1-212ENST00000552491 F8P00451 2351 aa3.56□□□□□ -1.84
LIMA1-212ENST00000552491 CMYA5Q8N3K9 4069 aa3.56□□□□□ -1.84
LIMA1-212ENST00000552491 BPY2O14599 106 aa3.56□□□□□ -1.84
LIMA1-212ENST00000552491 Q6ZRP5 223 aa3.56□□□□□ -1.84
LIMA1-212ENST00000552491 ERC2-IT1O76042 136 aa3.55□□□□□ -1.84
LIMA1-212ENST00000552491 NREPQ16612 68 aa3.55□□□□□ -1.84
LIMA1-212ENST00000552491 RETNQ9HD89 108 aa3.55□□□□□ -1.84
LIMA1-212ENST00000552491 DNAH1Q9P2D7 4330 aa3.55□□□□□ -1.84
LIMA1-212ENST00000552491 SMIM26A0A096LP01 95 aa3.55□□□□□ -1.84
LIMA1-212ENST00000552491 IGKV4-1P06312 121 aa3.55□□□□□ -1.84
LIMA1-212ENST00000552491 ATP5EP56381 51 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-212ENST00000552491 FP248Q71RG6 208 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-212ENST00000552491 H3BNG1 76 aa3.54□□□□□ -1.84
LIMA1-212ENST00000552491 C3orf84H3BNL1 204 aa3.54□□□□□ -1.84
LIMA1-212ENST00000552491 KPRPQ5T749 579 aaPredicted RBP3.54□□□□□ -1.84
LIMA1-212ENST00000552491 TMEM254Q8TBM7 123 aa3.54□□□□□ -1.84
LIMA1-212ENST00000552491 SERTAD4-AS1Q5TG53 156 aa3.54□□□□□ -1.84
LIMA1-212ENST00000552491 F8WDY8 70 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 ESRGQ1W209 222 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 Q8N377 158 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 DEFB105AQ8NG35 78 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 LINC00474Q9P2X8 69 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 INAFM1C9JVW0 142 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 Q6ZTC4 211 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 OCR1Q9BZK8 76 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 KCNQ1DNQ9H478 68 aa3.53□□□□□ -1.84
LIMA1-212ENST00000552491 IGLV5-48A0A075B6I7 105 aa3.52□□□□□ -1.85
LIMA1-212ENST00000552491 LINC00336Q6ZUF6 198 aa3.52□□□□□ -1.85
LIMA1-212ENST00000552491 MRAPQ8TCY5 172 aa3.52□□□□□ -1.85
LIMA1-212ENST00000552491 A0A1B0GW54 56 aa3.52□□□□□ -1.85
LIMA1-212ENST00000552491 C7orf33Q8WU49 177 aa3.52□□□□□ -1.85
LIMA1-212ENST00000552491 C1orf43Q9BWL3 253 aa3.52□□□□□ -1.85
LIMA1-212ENST00000552491 A0A0U1RQV1 116 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 SYCNQ0VAF6 134 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 FAM229BQ4G0N7 80 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 NKAPP1Q8N9T2 125 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 IGKV2D-24A0A075B6R9 120 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 A0A1W2PNM2 257 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 FAM168BA1KXE4 195 aa3.51□□□□□ -1.85
LIMA1-212ENST00000552491 PRYO14603 147 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 KRTAP7-1Q8IUC3 87 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 ST20-AS1Q8NBB2 130 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 Q9BRP9 147 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 DHRS4-AS1Q9P1J3 65 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 PRO0628Q9UI54 55 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 DNAH10Q8IVF4 4471 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 RPL37AP8A6NKH3 93 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 FUSP35637 526 aaKnown RBP eCLIP3.5□□□□□ -1.85
LIMA1-212ENST00000552491 LINC01556Q5JQF7 62 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 HIGD2AQ9BW72 106 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 DNAH3Q8TD57 4116 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 LYSTQ99698 3801 aa3.5□□□□□ -1.85
LIMA1-212ENST00000552491 KRTAP4-16G5E9R7 235 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-212ENST00000552491 KRTAP10-11P60412 298 aa3.49□□□□□ -1.85
LIMA1-212ENST00000552491 CASC10Q5T4H9 136 aa3.49□□□□□ -1.85
LIMA1-212ENST00000552491 PLA2G2DQ9UNK4 145 aa3.49□□□□□ -1.85
LIMA1-212ENST00000552491 TLX1NBP0CAT3 122 aa3.49□□□□□ -1.85
LIMA1-212ENST00000552491 Q6ZRX8 168 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms