RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MRPL55Q7Z7F7 128 aaKnown RBP13.2□□□□□ -0.3
VPS28-209ENST00000528142 FAM240AA0A1B0GVK7 77 aa13.2□□□□□ -0.3
VPS28-209ENST00000528142 Q6ZQY7 126 aa13.19□□□□□ -0.3
VPS28-209ENST00000528142 IGKV2-24A0A0C4DH68 120 aa13.18□□□□□ -0.3
VPS28-209ENST00000528142 PRYO14603 147 aa13.18□□□□□ -0.3
VPS28-209ENST00000528142 SIGMAR1Q99720 223 aa13.18□□□□□ -0.3
VPS28-209ENST00000528142 KMT2AQ03164 3969 aa13.18□□□□□ -0.3
VPS28-209ENST00000528142 SPRR1AP35321 89 aa13.18□□□□□ -0.3
VPS28-209ENST00000528142 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.18□□□□□ -0.3
VPS28-209ENST00000528142 A0A1W2PNN7 141 aa13.17□□□□□ -0.3
VPS28-209ENST00000528142 KRTAP4-16G5E9R7 235 aaPredicted RBP13.17□□□□□ -0.3
VPS28-209ENST00000528142 C3orf84H3BNL1 204 aa13.16□□□□□ -0.3
VPS28-209ENST00000528142 C14orf132Q9NPU4 83 aa13.16□□□□□ -0.3
VPS28-209ENST00000528142 A0A087WTM6 91 aa13.15□□□□□ -0.3
VPS28-209ENST00000528142 SDIM1Q6ZPB5 146 aa13.15□□□□□ -0.3
VPS28-209ENST00000528142 H3BQ85 93 aa13.14□□□□□ -0.31
VPS28-209ENST00000528142 XGP55808 180 aa13.14□□□□□ -0.31
VPS28-209ENST00000528142 ALMS1Q8TCU4 4167 aa13.14□□□□□ -0.31
VPS28-209ENST00000528142 JMJD7-PLA2G4BH0Y9G9 81 aa13.13□□□□□ -0.31
VPS28-209ENST00000528142 ACYP1P07311 99 aa13.13□□□□□ -0.31
VPS28-209ENST00000528142 LINC00476Q8WZB0 136 aa13.13□□□□□ -0.31
VPS28-209ENST00000528142 PKIGQ9Y2B9 76 aa13.13□□□□□ -0.31
VPS28-209ENST00000528142 CHTF8P0CG12 524 aa13.12□□□□□ -0.31
VPS28-209ENST00000528142 B5MCH6 92 aa13.11□□□□□ -0.31
VPS28-209ENST00000528142 LY6G6CO95867 125 aa13.11□□□□□ -0.31
VPS28-209ENST00000528142 Q6ZRX8 168 aa13.11□□□□□ -0.31
VPS28-209ENST00000528142 A0A1B0GV72 72 aa13.09□□□□□ -0.31
VPS28-209ENST00000528142 MT-ATP8P03928 68 aa13.09□□□□□ -0.31
VPS28-209ENST00000528142 GAGE2AQ6NT46 116 aa13.09□□□□□ -0.31
VPS28-209ENST00000528142 DNAH6Q9C0G6 4158 aa13.09□□□□□ -0.31
VPS28-209ENST00000528142 ETDCA0A1B0GVM5 59 aa13.08□□□□□ -0.32
VPS28-209ENST00000528142 GHRHP01286 108 aa13.08□□□□□ -0.32
VPS28-209ENST00000528142 C1orf134Q5TEV5 83 aa13.08□□□□□ -0.32
VPS28-209ENST00000528142 REG3GQ6UW15 175 aa13.06□□□□□ -0.32
VPS28-209ENST00000528142 Q9BRP9 147 aa13.06□□□□□ -0.32
VPS28-209ENST00000528142 DHRS4-AS1Q9P1J3 65 aa13.06□□□□□ -0.32
VPS28-209ENST00000528142 DNAH2Q9P225 4427 aa13.06□□□□□ -0.32
VPS28-209ENST00000528142 LINC00474Q9P2X8 69 aa13.06□□□□□ -0.32
VPS28-209ENST00000528142 LAMTOR3Q9UHA4 124 aa13.06□□□□□ -0.32
VPS28-209ENST00000528142 PANO1I0J062 215 aa13.04□□□□□ -0.32
VPS28-209ENST00000528142 CCKP06307 115 aa13.04□□□□□ -0.32
VPS28-209ENST00000528142 RBM3P98179 157 aaKnown RBP13.03□□□□□ -0.32
VPS28-209ENST00000528142 HYDINQ4G0P3 5121 aa13.03□□□□□ -0.32
VPS28-209ENST00000528142 PHF5AQ7RTV0 110 aaKnown RBP13.02□□□□□ -0.33
VPS28-209ENST00000528142 SMCR5Q8TEV8 140 aa13.01□□□□□ -0.33
VPS28-209ENST00000528142 KRTAP11-1Q8IUC1 163 aa13□□□□□ -0.33
VPS28-209ENST00000528142 LOC110117498A0A087WWA1 95 aa12.99□□□□□ -0.33
VPS28-209ENST00000528142 RTL8CO15255 209 aa12.99□□□□□ -0.33
VPS28-209ENST00000528142 NDUFV3P56181 108 aaKnown RBP12.99□□□□□ -0.33
VPS28-209ENST00000528142 LINC01547P58512 204 aaPredicted RBP12.99□□□□□ -0.33
VPS28-209ENST00000528142 SPACA4Q8TDM5 124 aa12.99□□□□□ -0.33
VPS28-209ENST00000528142 EPM2AB3EWF7 344 aa12.99□□□□□ -0.33
VPS28-209ENST00000528142 FUSP35637 526 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS28-209ENST00000528142 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.99□□□□□ -0.33
VPS28-209ENST00000528142 Q6ZQT0 140 aa12.98□□□□□ -0.33
VPS28-209ENST00000528142 Q8N377 158 aa12.97□□□□□ -0.33
VPS28-209ENST00000528142 ERC2-IT1O76042 136 aa12.97□□□□□ -0.33
VPS28-209ENST00000528142 SCGB1A1P11684 91 aa12.96□□□□□ -0.33
VPS28-209ENST00000528142 PCP4P48539 62 aa12.96□□□□□ -0.33
VPS28-209ENST00000528142 LINC00846Q9NV44 126 aa12.96□□□□□ -0.33
VPS28-209ENST00000528142 SACSQ9NZJ4 4579 aa12.96□□□□□ -0.34
VPS28-209ENST00000528142 UBE2BP63146 152 aa12.95□□□□□ -0.34
VPS28-209ENST00000528142 DEFB105AQ8NG35 78 aa12.95□□□□□ -0.34
VPS28-209ENST00000528142 DSCR8Q96T75 97 aa12.95□□□□□ -0.34
VPS28-209ENST00000528142 IGLV5-48A0A075B6I7 105 aa12.94□□□□□ -0.34
VPS28-209ENST00000528142 TRBV7-4A0A0J9YYF1 115 aa12.94□□□□□ -0.34
VPS28-209ENST00000528142 LINC00643Q86TS7 51 aa12.94□□□□□ -0.34
VPS28-209ENST00000528142 ST20-AS1Q8NBB2 130 aa12.94□□□□□ -0.34
VPS28-209ENST00000528142 TNP2Q05952 138 aa12.93□□□□□ -0.34
VPS28-209ENST00000528142 FAM19A1Q7Z5A9 133 aa12.93□□□□□ -0.34
VPS28-209ENST00000528142 PDE6GP18545 87 aa12.92□□□□□ -0.34
VPS28-209ENST00000528142 DPH3Q96FX2 82 aa12.92□□□□□ -0.34
VPS28-209ENST00000528142 DNAH17Q9UFH2 4485 aa12.92□□□□□ -0.34
VPS28-209ENST00000528142 PRLHP81277 87 aa12.91□□□□□ -0.34
VPS28-209ENST00000528142 IGLV5-52A0A0A0MRZ9 124 aa12.9□□□□□ -0.34
VPS28-209ENST00000528142 FRAS1Q86XX4 4008 aa12.9□□□□□ -0.34
VPS28-209ENST00000528142 H0Y9J4 135 aa12.88□□□□□ -0.35
VPS28-209ENST00000528142 LCE6AA0A183 80 aa12.87□□□□□ -0.35
VPS28-209ENST00000528142 Q6Q795 121 aa12.87□□□□□ -0.35
VPS28-209ENST00000528142 TRBV7-7A0A0K0K1E9 115 aa12.86□□□□□ -0.35
VPS28-209ENST00000528142 C3orf22Q8N5N4 141 aa12.85□□□□□ -0.35
VPS28-209ENST00000528142 PLAC8Q9NZF1 115 aa12.84□□□□□ -0.35
VPS28-209ENST00000528142 HIGD2AQ9BW72 106 aa12.83□□□□□ -0.35
VPS28-209ENST00000528142 BCE1O60756 84 aa12.82□□□□□ -0.36
VPS28-209ENST00000528142 SMIM29Q86T20 159 aa12.81□□□□□ -0.36
VPS28-209ENST00000528142 C21orf62-AS1Q17RA5 79 aa12.81□□□□□ -0.36
VPS28-209ENST00000528142 Q6JHZ5 121 aa12.81□□□□□ -0.36
VPS28-209ENST00000528142 IMUPQ9GZP8 106 aa12.81□□□□□ -0.36
VPS28-209ENST00000528142 FAT2Q9NYQ8 4349 aa12.8□□□□□ -0.36
VPS28-209ENST00000528142 HECTD4Q9Y4D8 3996 aa12.8□□□□□ -0.36
VPS28-209ENST00000528142 KRTAP10-2P60368 255 aa12.8□□□□□ -0.36
VPS28-209ENST00000528142 KRTAP13-1Q8IUC0 172 aa12.8□□□□□ -0.36
VPS28-209ENST00000528142 KMT2CQ8NEZ4 4911 aaKnown RBP12.79□□□□□ -0.36
VPS28-209ENST00000528142 UBE2AP49459 152 aa12.78□□□□□ -0.36
VPS28-209ENST00000528142 DNAH11Q96DT5 4516 aa12.78□□□□□ -0.36
VPS28-209ENST00000528142 UBL5Q9BZL1 73 aa12.77□□□□□ -0.37
VPS28-209ENST00000528142 RYR2Q92736 4967 aa12.76□□□□□ -0.37
VPS28-209ENST00000528142 IGKV3D-7A0A0C4DH55 119 aa12.74□□□□□ -0.37
VPS28-209ENST00000528142 SPRR1BP22528 89 aa12.73□□□□□ -0.37
VPS28-209ENST00000528142 C1orf137Q5JT78 98 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms