RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 LOC110117498A0A087WWA1 95 aa10.69□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 HUWE1Q7Z6Z7 4374 aaKnown RBP10.69□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 TRAV23DV6A0A075B6W5 121 aa10.69□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 M0R2N4 97 aa10.69□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 KPRPQ5T749 579 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 Q6ZQY7 126 aa10.69□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 HIGD2BQ4VC39 106 aa10.68□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 DNAH9Q9NYC9 4486 aa10.68□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 H3BNG1 76 aa10.68□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 LAMTOR3Q9UHA4 124 aa10.67□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 DIRC1Q969H9 104 aa10.66□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 VPREB1P12018 145 aa10.66□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 KLKP1Q107X0 134 aa10.66□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 FAM19A1Q7Z5A9 133 aa10.66□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 BRK1Q8WUW1 75 aa10.66□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 CAMK2N2Q96S95 79 aa10.65□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 UBL5Q9BZL1 73 aa10.65□□□□□ -0.7
MSH5-SAPCD1-208ENST00000498473 ZNF73O43830 326 aaPredicted RBP10.65□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 Q6ZTC4 211 aa10.65□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 C15orf56Q8N910 161 aa10.65□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 TRAV7A0A075B6U4 112 aa10.64□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 ATP5EP56381 51 aaPredicted RBP10.64□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 Q6ZRU5 148 aa10.64□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 COX7BP24311 80 aa10.62□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 ELOF1P60002 83 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 ESRGQ1W209 222 aa10.62□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQV1 116 aa10.62□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 H3BQ85 93 aa10.62□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 CSMD3Q7Z407 3707 aa10.62□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 TRBV7-6A0A0J9YX20 115 aa10.61□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 NDUFC1O43677 76 aa10.6□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 M0R378 163 aa10.6□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 LYSTQ99698 3801 aa10.59□□□□□ -0.71
MSH5-SAPCD1-208ENST00000498473 PDE6GP18545 87 aa10.58□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 Q6ZVQ6 151 aa10.58□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 TRBV7-4A0A0J9YYF1 115 aa10.57□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 LINC01547P58512 204 aaPredicted RBP10.57□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 Q6ZRP5 223 aa10.57□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 TENM2Q9NT68 2774 aa10.57□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 LINC00528Q8N1L1 170 aa10.56□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 LINC01556Q5JQF7 62 aa10.56□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 LINC00474Q9P2X8 69 aa10.54□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 IGKV2D-24A0A075B6R9 120 aa10.53□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 F8WEM9 126 aa10.53□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 HAMPP81172 84 aa10.53□□□□□ -0.72
MSH5-SAPCD1-208ENST00000498473 DEFB131BA0A096LNP1 70 aa10.52□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 PMAIP1Q13794 54 aa10.52□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 SYCNQ0VAF6 134 aa10.5□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 CXCL6P80162 114 aa10.5□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 PRR15Q8IV56 129 aa10.49□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 C11orf45Q8TAV5 145 aa10.49□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 SERTAD4-AS1Q5TG53 156 aa10.48□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 RMI2Q96E14 147 aa10.48□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 DNAH10OSP0CZ25 163 aa10.47□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 TRAV10A0A0B4J240 114 aa10.46□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 TM2D3Q9BRN9 247 aa10.46□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 KCNQ1DNQ9H478 68 aa10.46□□□□□ -0.73
MSH5-SAPCD1-208ENST00000498473 SNURFQ9Y675 71 aa10.46□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 C7orf33Q8WU49 177 aa10.45□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 B9D2Q9BPU9 175 aa10.45□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 SCXQ7RTU7 201 aa10.44□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 STARD9Q9P2P6 4700 aa10.44□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 DNAH7Q8WXX0 4024 aa10.44□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 DNAH1Q9P2D7 4330 aa10.44□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 TLX1NBP0CAT3 122 aa10.42□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 CD164Q04900 197 aa10.42□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 NKAPP1Q8N9T2 125 aa10.42□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 CASC10Q5T4H9 136 aa10.41□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 Q8N377 158 aa10.41□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 PLA2G2DQ9UNK4 145 aa10.41□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 LINC00588Q9Y4M8 146 aa10.4□□□□□ -0.74
MSH5-SAPCD1-208ENST00000498473 ERC2-IT1O76042 136 aa10.39□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 MPLKIPQ8TAP9 179 aa10.39□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 FAM168BA1KXE4 195 aa10.38□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 KRTAP4-16G5E9R7 235 aaPredicted RBP10.38□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 KRTAP7-1Q8IUC3 87 aa10.38□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 DEFB105AQ8NG35 78 aa10.37□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 IGLV5-37A0A075B6J1 123 aa10.37□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 FAM229BQ4G0N7 80 aa10.37□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 RPL37AP8A6NKH3 93 aa10.36□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 PLECQ15149 4684 aaKnown RBP10.36□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 IGLV1-50A0A075B6I6 118 aa10.35□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 IGLV5-48A0A075B6I7 105 aa10.35□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 Q9BRP9 147 aa10.35□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 SPRR1AP35321 89 aa10.35□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 Q6ZRX8 168 aa10.35□□□□□ -0.75
MSH5-SAPCD1-208ENST00000498473 PRYO14603 147 aa10.33□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 Q8N9L7 120 aa10.33□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 DHRS4-AS1Q9P1J3 65 aa10.33□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 IGKV4-1P06312 121 aa10.33□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 NREPQ16612 68 aa10.32□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 C3orf84H3BNL1 204 aa10.31□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 TMEM254Q8TBM7 123 aa10.31□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 TNP2Q05952 138 aa10.3□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 ST20-AS1Q8NBB2 130 aa10.3□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 ETDCA0A1B0GVM5 59 aa10.29□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 A0A1W2PNM2 257 aa10.29□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 BPY2O14599 106 aa10.29□□□□□ -0.76
MSH5-SAPCD1-208ENST00000498473 FUSP35637 526 aaKnown RBP eCLIP10.27□□□□□ -0.773e-6■□□□□ 9.4
Retrieved 100 of 20,778 RNA–protein pairs in 195.4 ms