RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 DNAH10Q8IVF4 4471 aa7.84□□□□□ -1.15
SYNE1-222ENST00000474655 IGLV1-50A0A075B6I6 118 aa7.84□□□□□ -1.15
SYNE1-222ENST00000474655 FAM168BA1KXE4 195 aa7.84□□□□□ -1.15
SYNE1-222ENST00000474655 LRCOL1A6NCL2 159 aa7.84□□□□□ -1.15
SYNE1-222ENST00000474655 C16orf90A8MZG2 172 aa7.84□□□□□ -1.15
SYNE1-222ENST00000474655 SPRR1AP35321 89 aa7.84□□□□□ -1.15
SYNE1-222ENST00000474655 KRTAP4-16G5E9R7 235 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-222ENST00000474655 PRYO14603 147 aa7.83□□□□□ -1.16
SYNE1-222ENST00000474655 GHRHP01286 108 aa7.83□□□□□ -1.16
SYNE1-222ENST00000474655 STARD9Q9P2P6 4700 aa7.83□□□□□ -1.16
SYNE1-222ENST00000474655 GAGE2AQ6NT46 116 aa7.82□□□□□ -1.16
SYNE1-222ENST00000474655 MRPL55Q7Z7F7 128 aaKnown RBP7.82□□□□□ -1.16
SYNE1-222ENST00000474655 A0A096LNI7 61 aa7.81□□□□□ -1.16
SYNE1-222ENST00000474655 CCKP06307 115 aa7.81□□□□□ -1.16
SYNE1-222ENST00000474655 VPS13DQ5THJ4 4388 aa7.81□□□□□ -1.16
SYNE1-222ENST00000474655 Q6Q795 121 aa7.8□□□□□ -1.16
SYNE1-222ENST00000474655 SMCR5Q8TEV8 140 aa7.8□□□□□ -1.16
SYNE1-222ENST00000474655 C9orf163Q8N9P6 203 aa7.79□□□□□ -1.16
SYNE1-222ENST00000474655 RBM3P98179 157 aaKnown RBP7.79□□□□□ -1.16
SYNE1-222ENST00000474655 Q6ZRX8 168 aa7.79□□□□□ -1.16
SYNE1-222ENST00000474655 FAM19A5Q7Z5A7 132 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-222ENST00000474655 LINC00643Q86TS7 51 aa7.79□□□□□ -1.16
SYNE1-222ENST00000474655 LOC110117498A0A087WWA1 95 aa7.78□□□□□ -1.16
SYNE1-222ENST00000474655 RPL37AP8A6NKH3 93 aa7.78□□□□□ -1.16
SYNE1-222ENST00000474655 B5MCH6 92 aa7.78□□□□□ -1.16
SYNE1-222ENST00000474655 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-222ENST00000474655 TRBV7-7A0A0K0K1E9 115 aa7.77□□□□□ -1.17
SYNE1-222ENST00000474655 Q6ZR54 194 aa7.77□□□□□ -1.17
SYNE1-222ENST00000474655 DHRS4-AS1Q9P1J3 65 aa7.77□□□□□ -1.17
SYNE1-222ENST00000474655 PKIGQ9Y2B9 76 aa7.77□□□□□ -1.17
SYNE1-222ENST00000474655 LAMTOR3Q9UHA4 124 aa7.76□□□□□ -1.17
SYNE1-222ENST00000474655 FBN3Q75N90 2809 aa7.76□□□□□ -1.17
SYNE1-222ENST00000474655 A0A1W2PNN7 141 aa7.76□□□□□ -1.17
SYNE1-222ENST00000474655 Q6ZQT0 140 aa7.76□□□□□ -1.17
SYNE1-222ENST00000474655 LINC00846Q9NV44 126 aa7.76□□□□□ -1.17
SYNE1-222ENST00000474655 PDE6GP18545 87 aa7.75□□□□□ -1.17
SYNE1-222ENST00000474655 Q9BRP9 147 aa7.75□□□□□ -1.17
SYNE1-222ENST00000474655 IMUPQ9GZP8 106 aa7.75□□□□□ -1.17
SYNE1-222ENST00000474655 A0A1B0GV72 72 aa7.74□□□□□ -1.17
SYNE1-222ENST00000474655 ETDCA0A1B0GVM5 59 aa7.74□□□□□ -1.17
SYNE1-222ENST00000474655 IGKV2-24A0A0C4DH68 120 aa7.74□□□□□ -1.17
SYNE1-222ENST00000474655 TRBV7-4A0A0J9YYF1 115 aa7.74□□□□□ -1.17
SYNE1-222ENST00000474655 NDUFV3P56181 108 aaKnown RBP7.74□□□□□ -1.17
SYNE1-222ENST00000474655 M0R2N4 97 aa7.73□□□□□ -1.17
SYNE1-222ENST00000474655 LINC01547P58512 204 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-222ENST00000474655 REG3GQ6UW15 175 aa7.73□□□□□ -1.17
SYNE1-222ENST00000474655 DSCR8Q96T75 97 aa7.73□□□□□ -1.17
SYNE1-222ENST00000474655 LINC00474Q9P2X8 69 aa7.72□□□□□ -1.17
SYNE1-222ENST00000474655 A0A087WTM6 91 aa7.71□□□□□ -1.17
SYNE1-222ENST00000474655 IGLV5-48A0A075B6I7 105 aa7.71□□□□□ -1.18
SYNE1-222ENST00000474655 Q8N377 158 aa7.71□□□□□ -1.18
SYNE1-222ENST00000474655 EPM2AB3EWF7 344 aa7.7□□□□□ -1.18
SYNE1-222ENST00000474655 CHTF8P0CG12 524 aa7.7□□□□□ -1.18
SYNE1-222ENST00000474655 Q6JHZ5 121 aa7.69□□□□□ -1.18
SYNE1-222ENST00000474655 TGP01266 2768 aa7.69□□□□□ -1.18
SYNE1-222ENST00000474655 KMT2AQ03164 3969 aa7.69□□□□□ -1.18
SYNE1-222ENST00000474655 ERC2-IT1O76042 136 aa7.66□□□□□ -1.18
SYNE1-222ENST00000474655 WWC2-AS2Q96NR7 200 aa7.66□□□□□ -1.18
SYNE1-222ENST00000474655 H0Y9J4 135 aa7.66□□□□□ -1.18
SYNE1-222ENST00000474655 PANO1I0J062 215 aa7.66□□□□□ -1.18
SYNE1-222ENST00000474655 UBE2BP63146 152 aa7.66□□□□□ -1.18
SYNE1-222ENST00000474655 TNP2Q05952 138 aa7.66□□□□□ -1.18
SYNE1-222ENST00000474655 PHF5AQ7RTV0 110 aaKnown RBP7.66□□□□□ -1.18
SYNE1-222ENST00000474655 C1orf134Q5TEV5 83 aa7.65□□□□□ -1.18
SYNE1-222ENST00000474655 ATP5EP2Q5VTU8 51 aa7.65□□□□□ -1.18
SYNE1-222ENST00000474655 KRTAP11-1Q8IUC1 163 aa7.65□□□□□ -1.18
SYNE1-222ENST00000474655 DEFB105AQ8NG35 78 aa7.65□□□□□ -1.18
SYNE1-222ENST00000474655 SPACA4Q8TDM5 124 aa7.65□□□□□ -1.18
SYNE1-222ENST00000474655 UBL5Q9BZL1 73 aa7.65□□□□□ -1.18
SYNE1-222ENST00000474655 ST20-AS1Q8NBB2 130 aa7.64□□□□□ -1.19
SYNE1-222ENST00000474655 SVIPQ8NHG7 77 aa7.64□□□□□ -1.19
SYNE1-222ENST00000474655 HECTD4Q9Y4D8 3996 aa7.64□□□□□ -1.19
SYNE1-222ENST00000474655 FAM19A1Q7Z5A9 133 aa7.64□□□□□ -1.19
SYNE1-222ENST00000474655 LINC00476Q8WZB0 136 aa7.64□□□□□ -1.19
SYNE1-222ENST00000474655 DNAH6Q9C0G6 4158 aa7.63□□□□□ -1.19
SYNE1-222ENST00000474655 DNAH2Q9P225 4427 aa7.62□□□□□ -1.19
SYNE1-222ENST00000474655 RTL8CO15255 209 aa7.62□□□□□ -1.19
SYNE1-222ENST00000474655 LY6G6CO95867 125 aa7.62□□□□□ -1.19
SYNE1-222ENST00000474655 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-222ENST00000474655 PRLHP81277 87 aa7.61□□□□□ -1.19
SYNE1-222ENST00000474655 IGKV3D-7A0A0C4DH55 119 aa7.61□□□□□ -1.19
SYNE1-222ENST00000474655 SMIM29Q86T20 159 aa7.61□□□□□ -1.19
SYNE1-222ENST00000474655 ANAPC13Q9BS18 74 aa7.61□□□□□ -1.19
SYNE1-222ENST00000474655 A0A1B0GW54 56 aa7.6□□□□□ -1.19
SYNE1-222ENST00000474655 HIST1H4AP62805 103 aaKnown RBP7.6□□□□□ -1.19
SYNE1-222ENST00000474655 Q6ZVQ6 151 aa7.6□□□□□ -1.19
SYNE1-222ENST00000474655 C3orf22Q8N5N4 141 aa7.6□□□□□ -1.19
SYNE1-222ENST00000474655 FAM236AA0A1B0GUQ0 79 aa7.59□□□□□ -1.2
SYNE1-222ENST00000474655 FAM236BA0A1B0GV22 79 aa7.59□□□□□ -1.2
SYNE1-222ENST00000474655 C3orf84H3BNL1 204 aa7.59□□□□□ -1.2
SYNE1-222ENST00000474655 KRTAP13-1Q8IUC0 172 aa7.59□□□□□ -1.2
SYNE1-222ENST00000474655 DNAH17Q9UFH2 4485 aa7.58□□□□□ -1.2
SYNE1-222ENST00000474655 BCE1O60756 84 aa7.58□□□□□ -1.2
SYNE1-222ENST00000474655 SPRR1BP22528 89 aa7.57□□□□□ -1.2
SYNE1-222ENST00000474655 HIGD2AQ9BW72 106 aa7.57□□□□□ -1.2
SYNE1-222ENST00000474655 IGLV8-61A0A075B6I0 122 aa7.56□□□□□ -1.2
SYNE1-222ENST00000474655 CXCL6P80162 114 aa7.56□□□□□ -1.2
SYNE1-222ENST00000474655 C1orf137Q5JT78 98 aa7.56□□□□□ -1.2
SYNE1-222ENST00000474655 DPH3Q96FX2 82 aa7.56□□□□□ -1.2
SYNE1-222ENST00000474655 PLAC8Q9NZF1 115 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms